Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48950 625 / 0 Pectin lyase-like superfamily protein (.1) AT4G23500 579 / 0 Pectin lyase-like superfamily protein (.1) AT2G23900 578 / 0 Pectin lyase-like superfamily protein (.1) AT3G61490 569 / 0 Pectin lyase-like superfamily protein (.1.2.3) AT3G62110 424 / 2e-145 Pectin lyase-like superfamily protein (.1) AT4G23820 393 / 1e-133 Pectin lyase-like superfamily protein (.1) AT4G33440 380 / 3e-128 Pectin lyase-like superfamily protein (.1) AT5G49215 365 / 1e-122 Pectin lyase-like superfamily protein (.1.2) AT5G41870 362 / 3e-121 Pectin lyase-like superfamily protein (.1) AT3G42950 358 / 3e-119 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039279 [exp] 898 / 0 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 585 / 0 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10028766 [exp] 566 / 0 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 563 / 0 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 418 / 6e-143 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 397 / 1e-134 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 389 / 2e-131 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 381 / 9e-129 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 378 / 2e-127 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073900 [exp] 625 / 0 AT3G48950 635 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 622 / 0 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 601 / 0 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 597 / 0 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G162400 [exp] 587 / 0 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.014G112100 [exp] 420 / 9e-144 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 419 / 2e-143 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 391 / 1e-132 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 392 / 2e-132 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 385 / 3e-130 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10027516 pacid=23144471 polypeptide=Lus10027516 locus=Lus10027516.g ID=Lus10027516.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTCAGATCAAACTCCGTCAATCCGACGTGGCTAAGATTCTCGTCGCCGTTCTTCTGCTGTCGGGGTCAGTGGGTCCCACGGGGGTAGCAG CTCAGGCCGCGGTCGGTGTGCCGACGGCGGCGCCGGTGCAGTACTCGGCCTTGAACTGTAGGAAACACTCTGCGGTGATCACGGATTTCGGTGGCGTCGG AGATGGGACAACGTTGAACACAAAGGCGTTCCAGACCGCCATCGCTAATCTGAGCCAATTGGCAGCCGACGGCGGAGCTCAGCTGATTGTGCCGCCGGGG AAATGGTTGACGGGGAGTTTCAACCTCACCAGCCACTTCACCCTTTTCCTCCACAAGGACGCCGTGATCTTGGGTTCTCAGAACATAGAAGACTGGCCAT TGGTGGCTCCTTTACCTTCTTACGGGCCGTCGTTTGACGGAATCAAAGATGGAAGTAGGCATGCCAGCCTTCTCTTCGGAGACAACCTCACCGACGTTGT GATCACCGGTAACAATGGCACAATCGACGGCCAAGGTGAGACGTGGTGGAAGGCTTTCAAGGCGAAAACGTTGAAAGACGCCAGACCTTTCTTGTTCGAG ATTATGAACTGTGATCAGCTCCAAATCACCAATGTTACCTTCACCAATTCTCCTATGTGGCATGTTCATCCCGTCTACTGCAGTAATGTGTTGATCCAGG GAGTGACCATATTGGCTCCAGTTGAAGTCCCCAACACAGATGGCATCAACCCAGATTCGTGCACAAACACCAGGATCGAAGACAGCTACATAGTCTCAGG TGACGACTGCATCGCAGTGAAATCAGGAATTGACCAGTACGGCATCAAAGTCGCCAAGCCAACAAAGCAACTGGCCATCCGGCGTGTCACCTGCATTTCC CCCGACAGCGCCCTCGTGGCACTCGGCAGCGAGATGTCCGGCGGAATCCAGGACGTCCGGATCGAGGACGTCACAGCGATCAACACCCAGTCAGCAATCA GGATCAAGTCTGCCGTGGGCCGCGGCGGATACGTCAAGGACATATTCGCCAGGAGGTTGACCTTTGACGGAATGGACAGGGCGTTCTGGATGTCCGGTAA CTACAAGACCCACGCGGACGAAGGGTTCGACCCGAATGCCCTGCCGGAGATTAATAACATCAATTACCGTGACGTCGTCGGGCAAAAAGTTAACGTTTCG GGGATGCTGTCGGGGATCACGAAGGATCCGTTTACCGGCATTTGTATGTCGAATGTGACACTGAATTTGGGGCCTAAGGCTAAGGAGCTGCAGTGGAATT GTACGGATGTTGCCGGGACTACTAGCCGTGTGACTCCGAAGCCTTGTGATGCTTTGCCTGATAAGGCTGGGTTGGACTGTCCGTTTCCTGAGGATAAGCT GCCGATCGATGGCCTCGTCCTGCAGAGTTGTACGACTGCGTGA
AA sequence Show only first row Show all	>Lus10027516 pacid=23144471 polypeptide=Lus10027516 locus=Lus10027516.g ID=Lus10027516.BGIv1.0 annot-version=v1.0 MASPQIKLRQSDVAKILVAVLLLSGSVGPTGVAAQAAVGVPTAAPVQYSALNCRKHSAVITDFGGVGDGTTLNTKAFQTAIANLSQLAADGGAQLIVPPG KWLTGSFNLTSHFTLFLHKDAVILGSQNIEDWPLVAPLPSYGPSFDGIKDGSRHASLLFGDNLTDVVITGNNGTIDGQGETWWKAFKAKTLKDARPFLFE IMNCDQLQITNVTFTNSPMWHVHPVYCSNVLIQGVTILAPVEVPNTDGINPDSCTNTRIEDSYIVSGDDCIAVKSGIDQYGIKVAKPTKQLAIRRVTCIS PDSALVALGSEMSGGIQDVRIEDVTAINTQSAIRIKSAVGRGGYVKDIFARRLTFDGMDRAFWMSGNYKTHADEGFDPNALPEINNINYRDVVGQKVNVS GMLSGITKDPFTGICMSNVTLNLGPKAKELQWNCTDVAGTTSRVTPKPCDALPDKAGLDCPFPEDKLPIDGLVLQSCTTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	0	1
AT4G31115			Protein of unknown function (D...		Lus10025683 [exp]	2.2	0.7616
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028896 [exp]	2.4	0.8176
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10013794 [exp]	3.0	0.7881
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10018342 [exp]	3.2	0.8060
AT2G23755			unknown protein		Lus10000575 [exp]	6.6	0.7246
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Lus10020899 [exp]	10.4	0.7576
AT5G04885			Glycosyl hydrolase family prot...		Lus10008434 [exp]	11.5	0.7171
AT2G04040		ATDTX1	detoxification 1, MATE efflux ...		Lus10009132 [exp]	12.3	0.7661
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	15.0	0.7463
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028424 [exp]	19.5	0.7406

Compare expression of checked genes

Lus10027516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.