Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01490 82 / 1e-20 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 51 / 5e-09 Copper transport protein family (.1) AT5G52760 49 / 3e-08 Copper transport protein family (.1) AT5G52730 49 / 1e-07 Copper transport protein family (.1) AT5G52770 42 / 7e-06 Copper transport protein family (.1) AT5G23760 42 / 7e-06 Copper transport protein family (.1) AT5G52750 43 / 9e-06 Heavy metal transport/detoxification superfamily protein (.1) AT5G26690 37 / 0.0008 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039285 [exp] 130 / 1e-39 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 127 / 2e-38 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 130 / 2e-37 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 122 / 5e-35 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 92 / 5e-24 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10036395 [exp] 82 / 2e-20 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 81 / 2e-19 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028762 [exp] 65 / 4e-14 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007455 [exp] 66 / 3e-13 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099500 [exp] 89 / 2e-23 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 85 / 6e-22 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G163400 [exp] 85 / 9e-22 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 81 / 3e-20 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 80 / 2e-19 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 79 / 2e-19 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 78 / 2e-19 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 71 / 2e-16 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147200 [exp] 59 / 5e-12 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147000 [exp] 59 / 9e-12 AT1G01490 61 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10027522 pacid=23144581 polypeptide=Lus10027522 locus=Lus10027522.g ID=Lus10027522.BGIv1.0 annot-version=v1.0 ATGAAGCAAGTGGTGCTTACGCTGGATCTACCCGACGACCGAGACAAGCGGAGAGCACTGAAGCGAGTAACGGCCACGACCTCCGGCATTGACTCGATTT CCGTGGACATGAAGGAGAAGAAGCTGACGGTGACCGGGGACTTTGACCCTGTCAAAGTAGTGAGCAAGCTGAGGAAGTTTTATCGCACGGACGTAGTCTC CGTCGGGGAGCCGAAGAAGCCGGAGGATAACAAGAAGAAGGGAGCGGCGGGGGAGGATGGGGGAAAAGACAAGAAGGACCCTGAACCGATGGTAGCAGTA CCGTACTGTGGCTGCTATCCTCACCACAACAGCTACAACTCGTACGGACGCTATGGTCAAGTAGTTGCGGGGGATGACCCTAATAATATTGTTTGTGTTA TTTCTTAA
AA sequence Show only first row Show all	>Lus10027522 pacid=23144581 polypeptide=Lus10027522 locus=Lus10027522.g ID=Lus10027522.BGIv1.0 annot-version=v1.0 MKQVVLTLDLPDDRDKRRALKRVTATTSGIDSISVDMKEKKLTVTGDFDPVKVVSKLRKFYRTDVVSVGEPKKPEDNKKKGAAGEDGGKDKKDPEPMVAV PYCGCYPHHNSYNSYGRYGQVVAGDDPNNIVCVIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	0	1
					Lus10041663 [exp]	1.7	0.9053
AT3G57120			Protein kinase superfamily pro...		Lus10029721 [exp]	2.4	0.9080
					Lus10017954 [exp]	3.0	0.9255
AT3G57120			Protein kinase superfamily pro...		Lus10011518 [exp]	3.2	0.8995
					Lus10012064 [exp]	3.5	0.8743
					Lus10023082 [exp]	4.0	0.8688
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020491 [exp]	4.2	0.8938
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10039771 [exp]	6.0	0.8858
					Lus10019165 [exp]	6.0	0.9026
AT1G69260		AFP1	ABI five binding protein (.1)		Lus10036898 [exp]	7.7	0.8696

Compare expression of checked genes

Lus10027522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.