Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01490 94 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 74 / 4e-16 Copper transport protein family (.1) AT5G52760 67 / 9e-14 Copper transport protein family (.1) AT5G52750 63 / 4e-12 Heavy metal transport/detoxification superfamily protein (.1) AT5G52730 53 / 5e-08 Copper transport protein family (.1) AT5G52770 50 / 7e-08 Copper transport protein family (.1) AT5G23760 49 / 2e-07 Copper transport protein family (.1) AT1G63950 47 / 9e-07 Heavy metal transport/detoxification superfamily protein (.1) AT5G26690 44 / 1e-05 Heavy metal transport/detoxification superfamily protein (.1) AT3G05920 43 / 4e-05 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039286 [exp] 367 / 3e-127 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 128 / 3e-36 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 117 / 1e-31 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027522 [exp] 107 / 4e-28 AT1G01490 83 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039285 [exp] 105 / 2e-27 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10036395 [exp] 95 / 5e-23 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 93 / 3e-22 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028762 [exp] 75 / 3e-16 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007455 [exp] 75 / 1e-14 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099500 [exp] 103 / 5e-27 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 103 / 7e-27 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 101 / 8e-26 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 100 / 2e-25 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 97 / 2e-24 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G163400 [exp] 96 / 9e-24 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 90 / 7e-22 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 90 / 2e-21 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147200 [exp] 75 / 2e-16 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147000 [exp] 75 / 3e-16 AT1G01490 61 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10027524 pacid=23144606 polypeptide=Lus10027524 locus=Lus10027524.g ID=Lus10027524.BGIv1.0 annot-version=v1.0 ATGAAGCAAGTGGTGCTTAAGCTGGATCTACACGACGACAGAGACAAACAGAGGGCGCTGAAGCGAGTCACGGCCATCTCCGGCGTCGACTCGGTCTCCA TGGACATGAAGGAGAAGAAGCTCACGGTCACTGGAGACGTTGACCCGGTCAAGATAGTGAGCAAGCTGAGGAAGCTGTGTCACACGGACATAGTCTCGGT CGGGGAGCCCAAGAAGCCGGAGGATAACAAGAAGAAGGACGCTGCGGCGGAGAAGAAGCCGGAGGATGGAGGAAAAGACAAGAAGACCCCTGATCCGCCA GTGGTGATTCCGTACTATTATAATAATCCTTATCACAACAGTTACCAGCATAATTACAATTACGCCCCTTATCCCGCCAGGACTTACAGCTACAACGCGC GTCATGGCCACGTGGTTGGGGATGATCCTAATGCCTGTTCCATTCATCTTCTCCCCCAATTCTCCCACTCCGCCAGATTGCTCCGCTGCCAAACAACTCC AGATCCAGACAAATCCGTTACAGAAATGAAGAAATTGGTACTGAAATTGGATATGCTCGACGAGAAGGACAAGCAGAAGGCGTTGAAGATCGTCTCCGGC CTTTCAGGGGTGGACTCGATTGCGGTTGATTTGAAAGAGAGCAAGCTGACGGTGACTGGGAAAACTGATCCTGTTGAAGTGGTAACAAAGCTGAGGAAGA GCTTCCGTAGGGCGGAGATCGTAACCGTAGGTCCGGCGACGACGAAAGAAGCGGAGAAGAAAGGCGGTGAGAATCAGAAGAAATCAGAGGATCAAGGCGG GAAGACGAGTAAAGGCGATAACCAGCAGCAGCAAGGACAAGGGCAGAGTAATAACATGAATCAGAAGAAAGATTCATCTGGTTCTGGTGGTAATTCGAAG AAGGACGATTCGTATGGGCATCTTGTGAATTCTGTTTACAGATCTCCTTATTATCATTACCCTCACCCTAATCAGATGACTGGTTACTACTACGCTCGGA GTGCAGAGGAAGATCCGAATGCTTGCGTCATTTCTTGA
AA sequence Show only first row Show all	>Lus10027524 pacid=23144606 polypeptide=Lus10027524 locus=Lus10027524.g ID=Lus10027524.BGIv1.0 annot-version=v1.0 MKQVVLKLDLHDDRDKQRALKRVTAISGVDSVSMDMKEKKLTVTGDVDPVKIVSKLRKLCHTDIVSVGEPKKPEDNKKKDAAAEKKPEDGGKDKKTPDPP VVIPYYYNNPYHNSYQHNYNYAPYPARTYSYNARHGHVVGDDPNACSIHLLPQFSHSARLLRCQTTPDPDKSVTEMKKLVLKLDMLDEKDKQKALKIVSG LSGVDSIAVDLKESKLTVTGKTDPVEVVTKLRKSFRRAEIVTVGPATTKEAEKKGGENQKKSEDQGGKTSKGDNQQQQGQGQSNNMNQKKDSSGSGGNSK KDDSYGHLVNSVYRSPYYHYPHPNQMTGYYYARSAEEDPNACVIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	0	1
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	1.4	0.8662
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	1.4	0.8499
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	2.4	0.8472
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	3.0	0.8000
AT4G37710			VQ motif-containing protein (....		Lus10019270 [exp]	4.7	0.7969
AT1G03290			unknown protein		Lus10012381 [exp]	4.9	0.8273
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	5.5	0.8165
AT4G11900			S-locus lectin protein kinase ...		Lus10041639 [exp]	8.9	0.7520
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	9.2	0.7663
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	9.8	0.8074

Compare expression of checked genes

Lus10027524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.