Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52790 298 / 1e-97 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 260 / 9e-83 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 249 / 1e-79 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 245 / 3e-77 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 242 / 3e-77 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 229 / 3e-71 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 228 / 7e-71 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT3G13070 42 / 0.0007 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027528 [exp] 403 / 5e-139 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 396 / 3e-136 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039288 [exp] 363 / 2e-123 AT5G52790 449 / 1e-154 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 263 / 3e-85 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 260 / 4e-83 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 250 / 8e-82 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 248 / 3e-79 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 243 / 1e-76 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 239 / 7e-75 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G147900 [exp] 317 / 6e-105 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 258 / 5e-83 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 256 / 2e-82 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 256 / 1e-80 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 249 / 1e-79 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.008G202100 [exp] 240 / 2e-75 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 240 / 2e-75 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.002G260401 [exp] 55 / 1e-09 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 42 / 0.0004 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027527 pacid=23144517 polypeptide=Lus10027527 locus=Lus10027527.g ID=Lus10027527.BGIv1.0 annot-version=v1.0 ATGGTCCGTCCGAAACAAAATATTTCAAAGTTTGTTAAACTTACGTTCCTGCTCGCGGCACTTCCGATCTTCCTGGACTCAATTCTTCCTCCTTGGGCAG CCATTCTCATATCAGTCACTCTCATTCTTGCCTTTGGTGAGATTATACCGCAATCAATTTGTTCAAGGTATGGACTCAGTGTTGGTGCAAAGCTGTCTCC TATTGTTAAAGTCATTGTCATACTCCTTTTTCCAGTTGCTTACCCCATCAGTAAGCTGCTTGACTGGGTTCTTGGGAAGAAGCATTCGACACTCCTACGG ACGAGCGGAGCTCAGAACCTTGGTGGACTTCCATGGAAACGAGGGAGAGGAGGAGAGTTGACACATGATGAGACAACAATCATAACTGGAGCTTTGGATA TGACACAGAAGACTGCCAAAGATGCCATGACTCCCACTTCCAAAATCTTCTCTCTTGACATCAATTCTAAGCTTGATGAGAAAACAATGGAACTTATAAT TAGCCATGGACATAGCCGTATACCCATCTACATGGGCAGCCCTAACAACATTGTTGGCCTCATTTTGGTTAAGAATTTGATCAAGTGTTGCTTTGAGGAT GAAATACCGATTAGGGAACTTACAATCAGAAAGATTCCAAGAAAGGTCAGAGCCGCATGGCCATTGTCGTCAAGCAGAAGCACGATCCTAATAACAAAGT CACCGAATTTCGAAAACCCGAAAGCAAAATCCGGAGTTTTAGAGATCAAAGTTGATCCCAATTCAAAACCAGGAGGCATAGAGAAGAAAGGAAATGGAGC CTGCTTGAATATGATCCAAGATAAACCCATTATTGGTAAGAAAGATTTGGAGACGATCTCGTTCCCTGACATAGAGGTGATCGGCATCATAACAATGGAG GATGTCATGGACAAACTTCTGCAGCAAGAGATTCTGGACGAGACCGACAAAACGACGACGTTTACAACCGGTAAGATCTGCAGAATTCAACTCTAA
AA sequence Show only first row Show all	>Lus10027527 pacid=23144517 polypeptide=Lus10027527 locus=Lus10027527.g ID=Lus10027527.BGIv1.0 annot-version=v1.0 MVRPKQNISKFVKLTFLLAALPIFLDSILPPWAAILISVTLILAFGEIIPQSICSRYGLSVGAKLSPIVKVIVILLFPVAYPISKLLDWVLGKKHSTLLR TSGAQNLGGLPWKRGRGGELTHDETTIITGALDMTQKTAKDAMTPTSKIFSLDINSKLDEKTMELIISHGHSRIPIYMGSPNNIVGLILVKNLIKCCFED EIPIRELTIRKIPRKVRAAWPLSSSRSTILITKSPNFENPKAKSGVLEIKVDPNSKPGGIEKKGNGACLNMIQDKPIIGKKDLETISFPDIEVIGIITME DVMDKLLQQEILDETDKTTTFTTGKICRIQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52790			CBS domain-containing protein ...		Lus10027527 [exp]	0	1
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10019550 [exp]	3.7	0.7497
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	4.6	0.8071
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	6.5	0.8071
					Lus10004437 [exp]	7.9	0.8071
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	9.2	0.8071
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	10.2	0.8071
					Lus10021739 [exp]	11.2	0.8071
					Lus10039674 [exp]	12.1	0.8071
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	13.0	0.8071
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	13.7	0.8071

Compare expression of checked genes

Lus10027527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.