Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52790 482 / 2e-167 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 435 / 2e-148 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 399 / 6e-136 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 395 / 2e-134 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 347 / 2e-114 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 343 / 6e-113 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 341 / 3e-112 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT3G13070 57 / 2e-08 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT1G55930 54 / 1e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039289 [exp] 809 / 0 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039288 [exp] 543 / 0 AT5G52790 449 / 1e-154 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 427 / 1e-145 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 423 / 4e-145 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027527 [exp] 380 / 1e-129 AT5G52790 302 / 2e-99 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 370 / 1e-126 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 355 / 9e-118 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 351 / 8e-117 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 343 / 4e-113 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G147900 [exp] 538 / 0 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 418 / 2e-141 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 414 / 2e-141 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 411 / 1e-140 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 405 / 5e-138 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.010G030200 [exp] 353 / 1e-116 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.008G202100 [exp] 352 / 3e-116 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.002G260401 [exp] 57 / 3e-10 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 59 / 6e-09 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027528 pacid=23144615 polypeptide=Lus10027528 locus=Lus10027528.g ID=Lus10027528.BGIv1.0 annot-version=v1.0 ATGGCAGATGATGTGCCATGCTGTGAGCCAATGTTCTGGGGATATCTGGTTGTGTGCATAACTCTGGTTGCCTTTGCTGGTCTAATGTCTGGCCTTACCT TAGGCCTCATGTCTCTCAGCTTGGTTGATCTTGAAGTCCTTATCAAAGCCGGTCGACCCGATGACCGCAAAAATGCAGCGAAGATACTGCCAATTGTGAA AAGGCAGCATTTACTCTTATGCACACTTCTCATCGGCAATGCAATGGCTATGGAGGCACTGCCAATCTTCCTGGACTCGATACTTCCTCCATGGGCAGCC ATTCTCATATCAGTCACTCTCATTCTTGCCTTTGGTGAGATTATACCACAGTCAATTTGTTCAAGGTATGGACTCAGTGTTGGTGCAAAGATGTCTCCTG TGGTCAAAGTGATTGTCATTGTCCTCTTCCCAATTGCTTATCCCATCAGTAAGCTGCTTGATTGGGTTCTTGGGAAGAGGCATTCAGCACTCCTGCGGCG AGCAGAGCTCAAAACCTTGGTGGACTTGCATGGAAACGAGGCAGGGAAAGGAGGAGAGCTGACACATGATGAGACAACAATCATAACTGGAGCTCTGGAT ATGACACAGAAGACTGCTAAAGATGCTATGACTCCCACTTCTAAGATCTTCTCTCTTGACATCAATTCTAAGCTTGATGAGAAAACCATGGAACTCATAA TTAGCCAAGGACACAGTCGTGTACCTATCTACATGGGCAGCCCTCACAACATTGTTGGCCTTATTTTGGTGAAGAATTTGATCAAGTGTCGCTTCGAGGA CGAAACGCCTATCAGGGAACTTACTATTCGAAGGATCCCAAGGGTACAAGATCACCTTCCTTTGTATGATATACTAAACCAATTCCAGAAGGGTCAAAGC CACATGGCTGTAGTCGTCAAGCAAAAGGAAGACCCTAACAAACCCCAAGTCGTAGAGATTAACGTCGATCCCAGTCCGAAACCTAGAGATACAGAGAAGA AAGGAAATCGTCATTATTATTCCAGTAGTATACTGAGGGAGCAGAGTGGAAGCAGAGACTATTTGAATACTATCCGGGAATTCCATGATAAGCCCATTTG CAAACAAGATTTGGAGACGATTTCCTTCTCCGATGTAGAGGTGGTGGGAATCATAACTCTGGAGGATGTCATTGAAGAACTTCTCCAGGAAGAGATTCTG GACGAGACTGACGAATACCCCGACGTTTACAACAGGATTAGGATCAATATGCTGCCGTCACCGATGACGTCGTCGCTTGGAACGCCGTCAGCTTCTCCAT TTCAACGGCGTCATTCTCCTCCGTACCAGATGCAGAGTAGTCCAGTACTGTCTCCGTATAACATTAATGTGCTGCGTTCGCCGATTCCGGCGCCGCACAT TGTTCGTTCTCCGTTGATGAAGCCTTCACTTTCCAGTTCTCCTGCAAATTCTGTTCCGAATTCTCCCAGTTTGCCGTACCAGAAGCTGAGGAAACCTGAC GAGTTGTAG
AA sequence Show only first row Show all	>Lus10027528 pacid=23144615 polypeptide=Lus10027528 locus=Lus10027528.g ID=Lus10027528.BGIv1.0 annot-version=v1.0 MADDVPCCEPMFWGYLVVCITLVAFAGLMSGLTLGLMSLSLVDLEVLIKAGRPDDRKNAAKILPIVKRQHLLLCTLLIGNAMAMEALPIFLDSILPPWAA ILISVTLILAFGEIIPQSICSRYGLSVGAKMSPVVKVIVIVLFPIAYPISKLLDWVLGKRHSALLRRAELKTLVDLHGNEAGKGGELTHDETTIITGALD MTQKTAKDAMTPTSKIFSLDINSKLDEKTMELIISQGHSRVPIYMGSPHNIVGLILVKNLIKCRFEDETPIRELTIRRIPRVQDHLPLYDILNQFQKGQS HMAVVVKQKEDPNKPQVVEINVDPSPKPRDTEKKGNRHYYSSSILREQSGSRDYLNTIREFHDKPICKQDLETISFSDVEVVGIITLEDVIEELLQEEIL DETDEYPDVYNRIRINMLPSPMTSSLGTPSASPFQRRHSPPYQMQSSPVLSPYNINVLRSPIPAPHIVRSPLMKPSLSSSPANSVPNSPSLPYQKLRKPD EL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52790			CBS domain-containing protein ...		Lus10027528 [exp]	0	1
					Lus10022893 [exp]	3.3	0.7947
AT1G72490			unknown protein		Lus10013160 [exp]	3.7	0.7800
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	5.2	0.7526
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029314 [exp]	5.5	0.6639
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	10.6	0.7157
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	13.6	0.6809
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	15.4	0.6963
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	18.8	0.6560
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032257 [exp]	19.5	0.7040
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	19.6	0.6560

Compare expression of checked genes

Lus10027528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.