Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52810 325 / 1e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039290 [exp] 442 / 1e-156 AT5G52810 293 / 4e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043176 [exp] 255 / 6e-84 AT5G52810 153 / 1e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G072500 [exp] 366 / 1e-126 AT5G52810 389 / 6e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02423 [flax] [poplar] OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family
Representative CDS sequence Show only first row Show all	>Lus10027529 pacid=23144617 polypeptide=Lus10027529 locus=Lus10027529.g ID=Lus10027529.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCTCCTCCTCTACCGCCACCGTCACCGCCACCGGTGGCCCGATCTTCATCGATGCCGAATCACTCCACTCAACGTTAACCCACGCCGCCT TAATCAATCACTTCCACACCTCTCTCCCCACCGTCACCCCTACCACCCTTCAAACCCCAATCCGCCAAAGCTACGCCGTTTCACCGACCTCCTCCCTCCT CCTAATGCCTTCATGGTCCTCCACGCCTTCCTTACCTTACATCGGCGTCAAGCTCGTCACCTACTTCCCTCAAAACTCCCCTGGAATCCACGCCTCCTAC GTCCTCTTCAGCTCCTCCACCGGCCAAACCCTAGCCACCTTAGACGGCACCGTTTTAACCCTCTACCGAACCTCTTCCATTTCTGGCCTAGCCTCCAAGC TCCTCTCCAGACCCGACGCCGCCGTGCTGGTCATGGTCGGTGCCGGCGCGTTGGCTCCGCATCTGATCAGAGCACACCTCGCCGCCAGACCCGGATTGAA AGAAGTCATCATCTGGAACCGAACCAGGATCAACGCCGTCCGATTGGCCGAGAAATTGACCGACGAATTAGGTCAAAATGGGGATTTGGAGTTTAGATGT TGTGATGATGAATTGGATGAGGTGGTTGGGTTGGGGGATATAGTTTGCTGCGCGACGAATTCGGAATCGGCATTGGTGAAGGGGGAGAAGTTGAAGAGAG GGGCGCATTTGGATTTGGTGGGATCGTTCAGGGAGGAGATGAAGGAGTGCGACGACGAAGCGTTGAGGAGAGCCGGGGTGGTGGTGGTGGATAATGAGGC GGCGATGGTGGAGGCTGGGGAAATTGTGGGTGGATTGGGGAGAGGTGTGATTATGAAGGAAGAGGTTGGGTTGTTGGTGGATTTGATTAATGGGGTGAAA AGTGGGAGGAAGGATTGGGATGAGATTACTGTGTTTAAGTCTGTAGGTTCTGGTGTTGTTGATATGCTTGCTGCTCAGTTTGTTTATGAAAATTGGGGGA AGAAGAAGATAGCTTGA
AA sequence Show only first row Show all	>Lus10027529 pacid=23144617 polypeptide=Lus10027529 locus=Lus10027529.g ID=Lus10027529.BGIv1.0 annot-version=v1.0 MASSSSSTATVTATGGPIFIDAESLHSTLTHAALINHFHTSLPTVTPTTLQTPIRQSYAVSPTSSLLLMPSWSSTPSLPYIGVKLVTYFPQNSPGIHASY VLFSSSTGQTLATLDGTVLTLYRTSSISGLASKLLSRPDAAVLVMVGAGALAPHLIRAHLAARPGLKEVIIWNRTRINAVRLAEKLTDELGQNGDLEFRC CDDELDEVVGLGDIVCCATNSESALVKGEKLKRGAHLDLVGSFREEMKECDDEALRRAGVVVVDNEAAMVEAGEIVGGLGRGVIMKEEVGLLVDLINGVK SGRKDWDEITVFKSVGSGVVDMLAAQFVYENWGKKKIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10027529 [exp]	0	1
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	1.7	0.8826
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	3.9	0.8795
AT4G35510			unknown protein		Lus10035988 [exp]	4.0	0.8478
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10016921 [exp]	4.2	0.8674
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	6.9	0.8778
AT4G26670			Mitochondrial import inner mem...		Lus10043170 [exp]	11.7	0.8808
AT2G15000			unknown protein		Lus10020971 [exp]	14.4	0.8528
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	17.6	0.8749
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	18.3	0.8657
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10011434 [exp]	20.2	0.8623

Compare expression of checked genes

Lus10027529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.