Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 56 / 1e-08 unknown protein AT4G02550 54 / 5e-08 unknown protein AT2G24960 42 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029477 [exp] 103 / 6e-27 ND / Lus10040115 [exp] 86 / 3e-18 AT4G17030 123 / 4e-33 expansin-like B1 (.1) Lus10036148 [exp] 77 / 2e-16 ND / Lus10013421 [exp] 54 / 1e-07 AT4G02210 418 / 1e-144 unknown protein Lus10026250 [exp] 52 / 5e-07 AT2G24960 750 / 0.0 unknown protein Lus10025720 [exp] 48 / 2e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265900 [exp] 59 / 2e-09 AT2G24960 761 / 0.0 unknown protein Potri.002G200600 [exp] 52 / 5e-07 AT4G02210 471 / 1e-163 unknown protein Potri.006G146100 [exp] 48 / 4e-06 AT4G02550 79 / 7e-17 unknown protein Potri.013G025200 [exp] 49 / 5e-06 AT2G24960 514 / 2e-168 unknown protein Potri.010G215600 [exp] 47 / 7e-06 AT4G02550 77 / 7e-16 unknown protein Potri.001G014200 [exp] 45 / 3e-05 AT4G02550 81 / 6e-18 unknown protein Potri.011G163248 [exp] 45 / 4e-05 AT4G02550 93 / 4e-22 unknown protein Potri.006G196716 [exp] 45 / 5e-05 AT4G02550 69 / 2e-13 unknown protein Potri.012G061366 [exp] 44 / 0.0001 AT4G02550 71 / 2e-14 unknown protein Potri.009G022650 [exp] 43 / 0.0002 AT4G02550 79 / 7e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027531 pacid=23144489 polypeptide=Lus10027531 locus=Lus10027531.g ID=Lus10027531.BGIv1.0 annot-version=v1.0 ATGGAGAACAAAGGACAGCTTCTCCCATTAAAATCACGTGCATATGTTATATGGAACGATGGCATGGATGAAGTTCTAACACGAGTTTTATTAGATCAAG CAAATAAAGGGAATAAGGGTGATGGAGATTGGAAACCTCAAGCATATCAAGCAGTTCTGGACGAAGTCGAAATCAGAGTATTGCTCGGAACTACTGTTAA AGGCGGGATGAACTTGTGGGATGAAGAGAAAAAAAAGGTTGTGGTCACGACTGAGAACGCGAGTGGTTGGGAAAATTATCTCAAGGGTCATACAGATGCA CGCTCTTATGCAAACAAGGAAATTAAAAATTGGGAGAGTATAGTGTTGCTATGTGGAAAAGATAGAGCCACAGGATCACATGTGGAGAACCTTGAAGATG CTATTGGAGCTATGGGAAGAGAGGATGATGATGTTCGTTCGACTTCCAGTTTTGAAGGTGGTGGTGTTGGAGGCTCAAATGCTAAACGAGGTTATGAAGG TAGTTCTCATTCGAGCAAGCGATTCAAGAAGGATAAAGTAGGAGATGCACTTGTGATGGTAGCCAATTCTTTGAATAGCTACTTTGAAAGTAAGCAGAAG AAAGAAGAACAACGACGCTCTACCAGGGAGATCTACGAAGTGCTATACAACATACCAGGACTTAGTCGTGCCGAAATTGCAAAGGCGGTTATCAACTTGA CGGATTTGCAAGAGAGAACTAGTGTGTCCTCGTGTTGCAGACATGATTATCGACACCAGCTTGACCATCTTATAATGTGGCACTTTGAGGATGAGAATGT GTTAGGCGGATTGGTGAGGAAGGGTCAAGATTTCTTTGCTATAACACCTTTTTATTTGGTTATTCGGGGTAGGAAAGATCGAAACGTTGTTGCTTGCTGT CAGATAGCAACGTCTTTCGTCCACCATTTCTGGGAAAATGCTTCTGTCATAGCTTATTTTGAACGAACTCAAACCATTAATAGAAGTATCTTTCCACTGT TAAAAGGACGTAAAAAAAACACTCCGTCTTCGCAATTCACCTCATTCCTAGCATGCAACAACTCACCTCAATCCAGTTCTGGTTAG
AA sequence Show only first row Show all	>Lus10027531 pacid=23144489 polypeptide=Lus10027531 locus=Lus10027531.g ID=Lus10027531.BGIv1.0 annot-version=v1.0 MENKGQLLPLKSRAYVIWNDGMDEVLTRVLLDQANKGNKGDGDWKPQAYQAVLDEVEIRVLLGTTVKGGMNLWDEEKKKVVVTTENASGWENYLKGHTDA RSYANKEIKNWESIVLLCGKDRATGSHVENLEDAIGAMGREDDDVRSTSSFEGGGVGGSNAKRGYEGSSHSSKRFKKDKVGDALVMVANSLNSYFESKQK KEEQRRSTREIYEVLYNIPGLSRAEIAKAVINLTDLQERTSVSSCCRHDYRHQLDHLIMWHFEDENVLGGLVRKGQDFFAITPFYLVIRGRKDRNVVACC QIATSFVHHFWENASVIAYFERTQTINRSIFPLLKGRKKNTPSSQFTSFLACNNSPQSSSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02210			unknown protein		Lus10027531 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027796 [exp]	3.2	0.8153
					Lus10000768 [exp]	3.9	0.8119
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10004664 [exp]	4.5	0.8063
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	6.6	0.8106
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10042079 [exp]	7.5	0.7537
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	8.9	0.7842
AT2G04220			Plant protein of unknown funct...		Lus10027127 [exp]	13.2	0.8181
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	21.2	0.7929
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	22.6	0.7381
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	29.9	0.7900

Compare expression of checked genes

Lus10027531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.