Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49140 390 / 1e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G24060 373 / 1e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT3G59300 189 / 2e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039291 [exp] 887 / 0 AT5G24060 400 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10014952 [exp] 456 / 5e-158 AT5G24060 324 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10038836 [exp] 272 / 1e-86 AT3G49140 275 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148600 [exp] 506 / 8e-177 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G072400 [exp] 500 / 2e-174 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.014G151700 [exp] 177 / 9e-50 AT3G59300 523 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G230700 [exp] 169 / 1e-46 AT3G59300 542 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027532 pacid=23144518 polypeptide=Lus10027532 locus=Lus10027532.g ID=Lus10027532.BGIv1.0 annot-version=v1.0 ATGATGATGTTGATGATGATTGAGTCAGCGACGGCCTCCCGCTTCACCGCCGGCGCTACCTTCTGCTCCTCCGCAGCTCCTTTATCTAAGTATCGTGCAG CGGGAAGCTTGGAGGAGTTAAGCAGAGTGAACGCGGCCACTCGCCGGCTGCTACGCACGGCTAGCTTCGATCTACCGCGGAAGAAATCCCAGATTCCAAG AGCTAGTTCTATATCAAAGAGGAGTGTCCTGCTAAATAGTACAATTCGAGCTTCTGCAGGACAATTGTCATCTGGTTCAGATCCTTCTGAGCAGAATGGT AAAGTGCAATATCATCCATTCGAAGAGATTTCGGGTTCAGCCTCAAAGGTTGTTGGAGATGCCAGGCTTACTGCTCAGGAGACTTGTAGGACCATCGTTG AGGTGAATTGCAAAGCTACTTTGATGTTGAGCAACTTGTTCAATGAAGAAATTCACGAGAACGTTATGTGGCCAGACATGTCATATGTGACTGATGAATA TGGAAATATCTATTTTCAAGTGAAGAATGATGAAGACATTTTGCAGAGTCTTACTTCAGAAAATAACTATGTGCAAGCTATTATAGGCTTTGATTCAGAA GATATGGTCAGTGAAATGGAGTTACTAGAAAATACTGACATTGGATTTGGAATTGAGGAGTTCGACGAAGAAGATAGTGATGCCGAAGAAGACAGTGACG ATGACGACTATGATGAGGACATAAAAGCTATCCTTGAAGAAGACTCTGATGATGATGAGGATGATGATGATGATGATGTTGGGGACTGGGCGAATTTGGA AACCATGGATTCTTCTCATCCACTGTATTTTGCCAAAAGGCTGAGTCAGGCTGCTTCAGATGATCCTATAGATTTCATGAAGCAACCGCCAACTGGTTTG GCCATACAAGGCATCCTCAGACCTGCATTTGGTGAAGAACACACTGACATCAAGAGGCATATGTCTGGCAATAAGTCCAAAACACAAGATCCTGATGCAA TCAATGGGAAGAATCCAAACTCTGCATCAGCTGATGATGTTTCAGTCTCGGCAGAAGAACTGGCAAAAGACGGGGCAGCCTCAAAGAATAGGACAACATT TTACAAACTAGAGACGACAAAGATTCAGCTGATTTCTGCTGATGGACACCAAACTACAGTTGAACCAGAAGTTTTCAGGAGGTCCAAACCTGATGCAATT GCACACTCAGCAGCCAAAATCATATCCCGTCTCAAAGATGGTGGCCAAAATGTCACGGAAGCATTGATATCTTTGTGTTGGAGATGTAAAGGTCTTCAAG TGGAGGAAGCAGCAGTTACTGGAGTGGATTCACTAGGGTTTGATTTGAGGGTTTGCTCGGGAACCCAAGTCCAGACTCTGCGGTTTGCGTTTAACTCACG GGCAACTTCAGAGTACAGCGCGGAGAGACAGCTGAATGATTTGTTATTCCCACTGACCAAACACAGTCCCTTGAAAAAGGAGACGCACCAAAATGAACAC TAG
AA sequence Show only first row Show all	>Lus10027532 pacid=23144518 polypeptide=Lus10027532 locus=Lus10027532.g ID=Lus10027532.BGIv1.0 annot-version=v1.0 MMMLMMIESATASRFTAGATFCSSAAPLSKYRAAGSLEELSRVNAATRRLLRTASFDLPRKKSQIPRASSISKRSVLLNSTIRASAGQLSSGSDPSEQNG KVQYHPFEEISGSASKVVGDARLTAQETCRTIVEVNCKATLMLSNLFNEEIHENVMWPDMSYVTDEYGNIYFQVKNDEDILQSLTSENNYVQAIIGFDSE DMVSEMELLENTDIGFGIEEFDEEDSDAEEDSDDDDYDEDIKAILEEDSDDDEDDDDDDVGDWANLETMDSSHPLYFAKRLSQAASDDPIDFMKQPPTGL AIQGILRPAFGEEHTDIKRHMSGNKSKTQDPDAINGKNPNSASADDVSVSAEELAKDGAASKNRTTFYKLETTKIQLISADGHQTTVEPEVFRRSKPDAI AHSAAKIISRLKDGGQNVTEALISLCWRCKGLQVEEAAVTGVDSLGFDLRVCSGTQVQTLRFAFNSRATSEYSAERQLNDLLFPLTKHSPLKKETHQNEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	0	1
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	1.0	0.9561
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	1.4	0.9349
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	2.8	0.9000
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	3.2	0.9084
AT5G08010			unknown protein		Lus10040520 [exp]	3.5	0.9033
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	4.0	0.8864
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	4.2	0.8983
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	4.2	0.9155
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	4.5	0.8802
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	4.5	0.9096

Compare expression of checked genes

Lus10027532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.