Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20730 473 / 4e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 387 / 4e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 356 / 8e-115 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 360 / 2e-114 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 338 / 4e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 338 / 9e-107 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 333 / 6e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 330 / 7e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 326 / 7e-103 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 327 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030124 [exp] 365 / 8e-121 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 358 / 1e-113 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 351 / 7e-113 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 348 / 2e-110 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 342 / 2e-108 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 335 / 2e-107 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013176 [exp] 335 / 3e-107 AT5G39350 621 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009487 [exp] 335 / 2e-105 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 334 / 2e-105 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G068900 [exp] 674 / 0 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 386 / 2e-126 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 362 / 4e-115 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 360 / 8e-114 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 353 / 1e-112 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 355 / 7e-111 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 341 / 6e-109 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 343 / 2e-107 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 340 / 2e-107 AT3G22690 582 / 0.0 unknown protein Potri.006G090900 [exp] 336 / 4e-107 AT3G14730 650 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027534 pacid=23144528 polypeptide=Lus10027534 locus=Lus10027534.g ID=Lus10027534.BGIv1.0 annot-version=v1.0 ATGTTGGAGCTTTGCATCGTGCGAGGAGCCAAAATGCAAGGCCTTTTAGCCCACGCTCGTTTGATTATATATGGGCTTGTTCTGAAACCCAATATATCCA CGAAATTGATTACTTTCTACGCAAGGCTTGGTGATGAGGGAACTGCTTATAAAGTGTTCGATAGAATGCCCGACAAAAATGTTGTGGCTTGGACAGCTCA GATTTCAGGGTATGTTCAAAATAAGTGTTATGAAGGAGCTATGCAGTTGTTTTCAAAAATGGTTAGAGTAGGTATCAGACCTAATCAGTTTACATATGGA AGTGTGCTTAAGGCATCTTGTTGTTTGAGGAGTTTTGGGAGAGGGCTACAAATACAGAGTCATGTGCAAAAGAGCAGGTTCCTCAGTAATTTATATGTAC AAAGTGTGTTAGTTGATTTGCATTCTAAGTGTGGCAGAATGGACGATGCTCGTTATTTGTTTGACACGATGCTAGAGAAAGATGTGGTTTCTTGGAATGC AATGGTTGGTGGGTATGCCGTCCAGGGCCTTGCAGACGATTCTTACCGTCTATTTCATGGCATGATGGTAGAAGGTTTGTTACCGGACCACTTCACTTTA GGGAACCTATTGAAGGTATCTGGTAGAACTAATGACTTCCTCAAAGTTAGCCAGCTCCACGGATTTGTTAAGAAATTAGGTTTCGAGGTGCTTCTTGATT TAATTGGATCAATAATCGATGCTTATGCAAGATGTGGTAGGTTGGAAAGTGCTAATTTCTTGTACAACACTATGAAAAAGAAAGATATAACATCTTGCAC AGCATTGATGAATGGGTTTGCTCAGAATAGCCTCTACAGAACACATGCCATGAATCTCTTCAAAGAAATATATAGAAAACAGTCCATGGAAATTGATGAT GTCATGTTGTGTTCAGTGATCAACATGTGTGCTAATGCAACTTCACTCGTAATGGGAAGACAAGTTCACGCTTTTGCTTTCAAAAGTAAACCGAGATATG ACGTGGCTGTTGGCAATTCTCTCGTTGACATGTATGCCAAATCGGGGGAAATCGAAGATGCTAGGCGTGCTTTTGGTGAAATAGGGGAGAAAAATGTCAT TTCGTGGACATCGTTGATTAGTGGATATGGAAAGCACGGATATGGATTCGAGGCAGTTGAATTGTGCAAAGAGATGGAAGACGAAGGTTTGATGCCGAAC GAAATTACTTTTCTGTCTGTTATATTTGCTTGTAGTCATTCGGGATTGGCTAGAGAAGGATCAGAGTTATTCAATGACATGATCAACAAACATAAGATCC TTCCACGGGCAGAGCATTTTTCTTGCATGGTTGATCTTTTGGCACGTTCGGGGCAGTTAGAAGAGGCTTATGATATGATTTCCAAGAATAATATCACGCC GAATTCGTCGTTGTGGGGTGCCATTCTTGGGGCATGCAGTTTATATGCTAATATTGCTCTTGGGGAGACTGTAGCTACACGTCTCATTAGTTTGAATCCA GAAAAGTCAGTTAATTATGCAGTTCTAGGTAACATATATGCTGCAACTGGCGCATGGCATAATTATTGCAAGATCAGAAACTTGATGGGCGAGAGAAAGT TGAAAAAGACTCCGGGTTGCAGCAGTATAGATTCCCCTAGGAACGTTTACCTGCTACAAGAAAGATGA
AA sequence Show only first row Show all	>Lus10027534 pacid=23144528 polypeptide=Lus10027534 locus=Lus10027534.g ID=Lus10027534.BGIv1.0 annot-version=v1.0 MLELCIVRGAKMQGLLAHARLIIYGLVLKPNISTKLITFYARLGDEGTAYKVFDRMPDKNVVAWTAQISGYVQNKCYEGAMQLFSKMVRVGIRPNQFTYG SVLKASCCLRSFGRGLQIQSHVQKSRFLSNLYVQSVLVDLHSKCGRMDDARYLFDTMLEKDVVSWNAMVGGYAVQGLADDSYRLFHGMMVEGLLPDHFTL GNLLKVSGRTNDFLKVSQLHGFVKKLGFEVLLDLIGSIIDAYARCGRLESANFLYNTMKKKDITSCTALMNGFAQNSLYRTHAMNLFKEIYRKQSMEIDD VMLCSVINMCANATSLVMGRQVHAFAFKSKPRYDVAVGNSLVDMYAKSGEIEDARRAFGEIGEKNVISWTSLISGYGKHGYGFEAVELCKEMEDEGLMPN EITFLSVIFACSHSGLAREGSELFNDMINKHKILPRAEHFSCMVDLLARSGQLEEAYDMISKNNITPNSSLWGAILGACSLYANIALGETVATRLISLNP EKSVNYAVLGNIYAATGAWHNYCKIRNLMGERKLKKTPGCSSIDSPRNVYLLQER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20730			Tetratricopeptide repeat (TPR)...		Lus10027534 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	4.9	0.8038
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	6.2	0.8317
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10032684 [exp]	8.5	0.8110
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	8.7	0.8425
AT5G19210			P-loop containing nucleoside t...		Lus10010514 [exp]	8.8	0.7992
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	9.8	0.8259
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	12.7	0.8305
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	17.2	0.8177
AT3G05350			Metallopeptidase M24 family pr...		Lus10029923 [exp]	23.5	0.7996
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	26.4	0.7994

Compare expression of checked genes

Lus10027534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.