Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79940 1056 / 0 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT4G21180 867 / 0 ATERDJ2B DnaJ / Sec63 Brl domains-containing protein (.1) AT1G20960 101 / 7e-22 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 87 / 3e-17 U5 small nuclear ribonucleoprotein helicase (.1) AT3G08970 72 / 7e-13 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT2G33735 65 / 1e-12 Chaperone DnaJ-domain superfamily protein (.1) AT5G01390 66 / 7e-12 DNAJ heat shock family protein (.1.2.3.4) AT3G62600 67 / 1e-11 ATERDJ3B DNAJ heat shock family protein (.1) AT1G59725 65 / 5e-11 DNAJ heat shock family protein (.1) AT1G61770 63 / 1e-10 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039293 [exp] 1284 / 0 AT1G79940 1086 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Lus10016048 [exp] 102 / 4e-22 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025168 [exp] 102 / 7e-22 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10042629 [exp] 80 / 4e-16 AT1G20960 402 / 3e-128 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10003380 [exp] 78 / 1e-14 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10002852 [exp] 77 / 2e-14 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022297 [exp] 68 / 5e-12 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 66 / 2e-11 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 66 / 2e-11 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G072200 [exp] 1117 / 0 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.017G148800 [exp] 1075 / 0 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.015G095500 [exp] 103 / 2e-22 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 102 / 3e-22 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.016G120000 [exp] 77 / 2e-14 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G103900 [exp] 66 / 1e-12 AT2G33735 147 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G022600 [exp] 66 / 1e-11 AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 66 / 4e-11 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 66 / 4e-11 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.010G036200 [exp] 66 / 4e-11 AT1G24120 566 / 0.0 ARG1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF02889 [flax] [poplar] Sec63 Sec63 Brl domain
Representative CDS sequence Show only first row Show all	>Lus10027536 pacid=23144445 polypeptide=Lus10027536 locus=Lus10027536.g ID=Lus10027536.BGIv1.0 annot-version=v1.0 ATGGCGAACACTGAAGAAAATCATGCATTGTTCCCTATTTTTATTCTGACAATAATGGCGCTGCCCATGGTGCCTTACACAATCACGAAGTTATGCCGTG CTGCCTCAAAGAAGGCCAAGATACTTCACTGCAGTTGTTCCGAGTGTAATCGTTCGGGCAAGTACCGCAAATCTGTTTTCCAGCGGATTTCGAATTTCTC GACATGCAGTAACTTGACCTTGATTCTGCTTTGGATCGTTATGATATTTCTGGTTTCATACATAAAGAATATGAGCCGAGAGGCTCAACCTTTTGATCCA TACTCTATTCTTGAGTTGCAACCTGGTGCTTCAGACTCAGAAATTAAAAAGAGCTACAGGAAGCTTTCTGTTCAATACCATCCGGATAAAAATCCAGATC CAGAGGCTCACACATACTTTGTGGAGTATATAACAAAGGCCTATCAAGCTCTGACAGACCCTATATCTCGTGAGAACTACGAGAAATATGGTCATCCAGA TGGTAGACAGGGATTTCAAATGGGAATTGCTCTTCCTAAATTTCTGCTAGAGATTGATGGTGAATCTGGTGGAATTCTTCTACTTTGGATAGTTGGTATT TGTATTCTCTTGCCGCTGCTGATAGCTGCAATATATCTATCAAGATCATCAAAATATACTGGGAATTATGTTATGCATCAAACTCTCTCTGCGTATTATT ATTTTATGAAGCCATCTCTGGCCCCAAGCAAAGTGATGGAGGTTTTCACAAAAGCTGCCGAATATATGGAAATACCAGTTCGGAGGACTGACGACGAGCC TCTTCAGAAGCTCTTTATGTCTGTTAGAAGTGAGTTGAATCTTGACATCAAGAACATTAAGCAAGAGCAGGCCAAATTTTGGAAGCAGCACCCAGCTCTA GTTAAGACAGAATTGCTGATTCAAGCTCAGTTGACACGTGAATCAGCAGCGTTGCCCCCTGCCTTGCAAGGCGACTTCAAACGTGTGTTAGAACTTGCTC CTCGCCTTCTGGAAGAGCTAATGAAGATGGCAGTTATACCTCGTAATGCTCAGATGCACGGATGGCTGAGGCCTGCTACAGGGGTTGTTGAGCTGTCTCA ATGCATCACTCAGGCTGTTCCTCTCAGTGCAAGGAAGTCAACAGGAGGTTCTGCAGAAGGAGTTGCGCCATTCTTGCAGCTGCCACATTTCAGCGACTCT GTTATCAAGAAAATAGCTCGCAAGAAGGTAAGAACTTTCCAGGACTTATTCGACATGGCTCCAAAAGATCGTGCTGAGCTTCTCGAGCAAGTAGCTGGGT TCAGTCCAGCTGAAGTACAAGATGTCGAGACGGTACTGGAAATGATGCCTTCCGTAACAACTGAAGTTAGATGTGAAACCGAGGGTGAAGAGGGCATACA AGAGGGCGACATTGTTACACTTCAAGCTTGGATAACTCTGAAGCGAGCCAATGGCATGCTCGCTGCACTTCCTCACTCTCCTTACTACCCTTTCCGCAAG GAAGAAAATTTCTGGTTCCTACTTGCAGATCCAGTCACAAACAACGTGTGGTTTTCTCAGAAGGTTAATTTCATGGACGAGCCAGCCGCCATAACCGGAG CATCTAAGGCCATCGAAGACACCATGGAAGGTTCAGGAGCGGGCGTGAAGGAGATAAGTACCGCAGTCAGAGAAGCCGTCGAAAAAGTTAAGAGTGGCTC GAGGCTTGTTATGGGCAAGTTCCCCGCTCCGGCCGAGGGGACCTACAACCTCACGTGTTACTGCTTGTGCGATGCTTGGATTGGATGCGACAAGAAGACG AGCTTGAAGGTTAAGATTCTGAAGCGGACTAGGGCTGGAACTCGCGGGTTTGTGTCCGAAGAGGGACCTATTGCTGAGGATGGGATTGAAGAGGAAGAGG AGAACGATGAGGAGGAATATGAAGAGGATTACGAGAGTGAGTACAGTGAGGATGAAGAAGAAGAGGAAGAAAAGGATACGAAAAAGAAAGGCACAACGGT GGCTAACGAGACTGCGCATAAAAAGGGGTCGAGTTCAGAGGGTTCGGGCTCGGATGAAGAGTAA
AA sequence Show only first row Show all	>Lus10027536 pacid=23144445 polypeptide=Lus10027536 locus=Lus10027536.g ID=Lus10027536.BGIv1.0 annot-version=v1.0 MANTEENHALFPIFILTIMALPMVPYTITKLCRAASKKAKILHCSCSECNRSGKYRKSVFQRISNFSTCSNLTLILLWIVMIFLVSYIKNMSREAQPFDP YSILELQPGASDSEIKKSYRKLSVQYHPDKNPDPEAHTYFVEYITKAYQALTDPISRENYEKYGHPDGRQGFQMGIALPKFLLEIDGESGGILLLWIVGI CILLPLLIAAIYLSRSSKYTGNYVMHQTLSAYYYFMKPSLAPSKVMEVFTKAAEYMEIPVRRTDDEPLQKLFMSVRSELNLDIKNIKQEQAKFWKQHPAL VKTELLIQAQLTRESAALPPALQGDFKRVLELAPRLLEELMKMAVIPRNAQMHGWLRPATGVVELSQCITQAVPLSARKSTGGSAEGVAPFLQLPHFSDS VIKKIARKKVRTFQDLFDMAPKDRAELLEQVAGFSPAEVQDVETVLEMMPSVTTEVRCETEGEEGIQEGDIVTLQAWITLKRANGMLAALPHSPYYPFRK EENFWFLLADPVTNNVWFSQKVNFMDEPAAITGASKAIEDTMEGSGAGVKEISTAVREAVEKVKSGSRLVMGKFPAPAEGTYNLTCYCLCDAWIGCDKKT SLKVKILKRTRAGTRGFVSEEGPIAEDGIEEEEENDEEEYEEDYESEYSEDEEEEEEKDTKKKGTTVANETAHKKGSSSEGSGSDEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10027536 [exp]	0	1
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	1.0	0.8933
AT4G27500		PPI1	proton pump interactor 1 (.1)		Lus10005546 [exp]	6.2	0.7156
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	22.8	0.7418
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018281 [exp]	24.2	0.6795
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	24.2	0.6960
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10005155 [exp]	29.4	0.7638
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	31.2	0.7181
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	41.6	0.7315
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10039014 [exp]	45.7	0.6686
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	48.0	0.6806

Compare expression of checked genes

Lus10027536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.