Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62650 593 / 0 Tic22-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039294 [exp] 1039 / 0 AT5G62650 605 / 0.0 Tic22-like family protein (.1) Lus10010502 [exp] 115 / 6e-31 AT5G62650 69 / 2e-15 Tic22-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G072100 [exp] 678 / 0 AT5G62650 643 / 0.0 Tic22-like family protein (.1) Potri.017G148900 [exp] 676 / 0 AT5G62650 618 / 0.0 Tic22-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04278 [flax] [poplar] Tic22 Tic22-like family
Representative CDS sequence Show only first row Show all	>Lus10027537 pacid=23144619 polypeptide=Lus10027537 locus=Lus10027537.g ID=Lus10027537.BGIv1.0 annot-version=v1.0 ATGGCCACCTCGGCGGAGCCGCCGCAGAACCACCACCGCCGTCATCATCCGTTTCCCAATTTCTTCCACTCAGCTACCTCCGCCGTCCTCTCTCTCTTGC CCAACCCCAGGACTTCATCAGCTCCTCCAATCACGTCTCCTTCTTCCTCGCCTCCTCCTCACGTCTGCATCCCATTCAACTTCGTCGACTCGTCTTATCC GCTCAATCAACAATCCGTCATCCGTTCTCCTCTGGAGTCCGGTCAGTCCGACTCGGTCTCCTCCACATCGGCGACTGTCAAGGGCTTATCCTCTGCCGAG TCAAACTCCGGATTCCCGTCCACGGTCAGGATTTCCGGCCTGAATTCCGACGGAAAGGGCGGCGGGCCTGCTTTCGTCGGACAGGTTTTCAGTATGTGTG ATCTTTCTGGGACTGGATTGATGGCCGTCTCTACTTACATCGAGCTCCCCTTCATCAATGAGAGAACGCCTGAGTGGCTGAAGAAGATTCTTGCACCAGT TACCAAAAAAGATAAGAACGGTCCTATGTTTCGATTCTTCATGGATTTAGGGGATGCAGTTTCGTACGTGAAGAAACTGAACATTCCCAGTGGTGTTGTT GGTGCTTGCCGCCTTGATTTGGCATATGAACATTTCAAGGAAAAACCTAATCTATTCCAGTTCGTTCCAAATAAAGAACAGGTGAAGGCAGCAAAGCAGC TCCTGAAGACAATGCCAGAAAGTGATGGGAAGACAACGGTGGACGGGGTTCCTATTTTTTCTGCTCATAACTTAGATATTGCCATAGCCACCTCAGACGG AATTAAATGGTATACTCCATACTTCTTCAATAAAAGTATGCTTGATGGCATTATCGAAGATTCTGTTGATCAGCATTTCCACACTTTAATACAAACTCGG CACATGCAGCGCCGACGAGATGTGGTTGATGATAACTTTGCAGCAGACGTGATGGAAGAAATGGCAGATAGCCTAATGGACCCACCTGAGGTTGATGAGA TGATGGATGAGATGGGCAATGTTGGTATTCCGCTAAGTGTCATATCAAAAGCTGCTGAAATGGAGCTTCTTTATGCGGTAGATAAAGTACTCCTTGGCAA CCGTTGGTTGAGGAAGGCCACTGGCATTCAGCCTAGGTTCCCCTATGTTGTTGATTCATTTGAGAGAAGGAGTGCCTATTCTTTCAAGAAAGCCTCAAAG ACAACCAGCTTAAGTCATGTTTCTCAAGCTGGTGGTAGTGATTCAGAGGTTGAACCGGAAAACAACACCCAAGCCAATAGCTATGAAGAGAGACCAGATT TGCGACTGACGTTCGGAGATTGGTTCGGTTTGCGGTTGAAACAACCATTCAAACCGGCTAGGGAGACAGAATCAAGGACGGAGGGTTCCTCGAAAGAACA GATGCAGCAGAAGCTAGTAGATAATCCACTTCTGCCGAAAATCACCATGGTAGGGATATCCACCGGGGAGACAGGTAAAGTGAGTAAAGCTAGTTTGAAA AAGACGATGGAGAGTCTAAGAAAAGAGTTGGAGCAGGCGGACCAAGGTAAAACCTCCAGTAGTGATAATGGTGATGGTGATTTCAAAATCGCAGATAGAG ATCCACTGTTTGTGGCGAACGTGGGGGATTACTCCCGGTGGATTCGTCGAGGAATGAGCTGA
AA sequence Show only first row Show all	>Lus10027537 pacid=23144619 polypeptide=Lus10027537 locus=Lus10027537.g ID=Lus10027537.BGIv1.0 annot-version=v1.0 MATSAEPPQNHHRRHHPFPNFFHSATSAVLSLLPNPRTSSAPPITSPSSSPPPHVCIPFNFVDSSYPLNQQSVIRSPLESGQSDSVSSTSATVKGLSSAE SNSGFPSTVRISGLNSDGKGGGPAFVGQVFSMCDLSGTGLMAVSTYIELPFINERTPEWLKKILAPVTKKDKNGPMFRFFMDLGDAVSYVKKLNIPSGVV GACRLDLAYEHFKEKPNLFQFVPNKEQVKAAKQLLKTMPESDGKTTVDGVPIFSAHNLDIAIATSDGIKWYTPYFFNKSMLDGIIEDSVDQHFHTLIQTR HMQRRRDVVDDNFAADVMEEMADSLMDPPEVDEMMDEMGNVGIPLSVISKAAEMELLYAVDKVLLGNRWLRKATGIQPRFPYVVDSFERRSAYSFKKASK TTSLSHVSQAGGSDSEVEPENNTQANSYEERPDLRLTFGDWFGLRLKQPFKPARETESRTEGSSKEQMQQKLVDNPLLPKITMVGISTGETGKVSKASLK KTMESLRKELEQADQGKTSSSDNGDGDFKIADRDPLFVANVGDYSRWIRRGMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62650			Tic22-like family protein (.1)		Lus10027537 [exp]	0	1
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	8.9	0.8044
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10042322 [exp]	9.6	0.7993
					Lus10032008 [exp]	10.7	0.7882
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	13.2	0.7803
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	14.0	0.7865
AT1G55140			Ribonuclease III family protei...		Lus10015626 [exp]	14.8	0.7599
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003689 [exp]	16.6	0.7045
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	28.8	0.7652
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10019849 [exp]	28.8	0.7692
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	29.1	0.7702

Compare expression of checked genes

Lus10027537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.