Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52830 170 / 5e-49 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G01250 150 / 3e-42 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT4G23550 141 / 7e-39 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT5G45050 134 / 6e-34 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G34830 130 / 2e-33 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 126 / 5e-32 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT3G58710 116 / 9e-30 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT1G29280 110 / 7e-28 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT5G45260 104 / 8e-24 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G30590 100 / 2e-23 WRKY WRKY21 WRKY DNA-binding protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039295 [exp] 442 / 2e-155 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10032303 [exp] 149 / 7e-42 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10024676 [exp] 148 / 1e-41 AT4G01250 163 / 7e-49 WRKY family transcription factor (.1) Lus10007907 [exp] 149 / 7e-41 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 145 / 1e-40 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10038426 [exp] 134 / 3e-36 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10018815 [exp] 128 / 2e-32 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1) Lus10007305 [exp] 109 / 5e-28 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10029252 [exp] 108 / 3e-27 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G149000 [exp] 202 / 2e-60 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.004G072000 [exp] 191 / 3e-56 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.014G090300 [exp] 152 / 1e-42 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.002G164400 [exp] 152 / 2e-42 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.001G099001 [exp] 149 / 2e-41 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1) Potri.003G132700 [exp] 147 / 9e-41 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.011G157100 [exp] 139 / 1e-36 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.001G460600 [exp] 138 / 2e-36 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G070100 [exp] 118 / 2e-30 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.004G060900 [exp] 114 / 5e-29 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10027538 pacid=23144448 polypeptide=Lus10027538 locus=Lus10027538.g ID=Lus10027538.BGIv1.0 annot-version=v1.0 ATGGCTAACAACGACGACTGGGATCTCACCGCCATCGTCAGGAGTTGCACGACCTCCGCCGGCGGCCCCAATGAAGAATCCGACCGCAACAACCCTCTCG CCGGTTTGACTTTCGAGACCGAACCCGACCCGTTCGCCTTCCCGGATCTTCCACACAGCGGATTCCAGGAGTTACTACAAGATTCGTATGACAACAAGCC TTTCTCGTCCGGTCAACGGGATCTTATTATTCCTCCTCCTCCTCCTCCGCTTACGCCGAATACTTCCGATTTCGGTGGTCAAAGTCAGCGGCGGACGGAG GTGACTAGCCCTCGGGTTGTTGTTGTTAGAAATCAGCAGCAACAGACAACGCAGGATCTTGGGAATCGTCATCAACGGCAGATGCAAGGGAGCTCATCTT CTGGATACATGGGTGGTGGTAGCAGTAGTAGTAATAATCTGGCGTTTTCGTTTAGTTCTTCGTTGAGGAGCATCCAATCGCAGCCTGCAACCTCACGGCC AAGGAAAAAGAAGAATAACCAGAAGCGGCTGGTGGTTCAGGTGACGGCGGATAATCTGTCGAACGATGTTTGGGCTTGGCGGAAGTACGGACAAAAGCCC ATCAAAGGATCTCCTTATCCAAGGAATTACTACAGATGCAGCAGTACGAAAGGCTGTGGAGCAAGGAAGCAAGTGGAGAGGAGCACTACGGATCCCAACA TGTTCATCATAAGCTACGCCGGCGACCACACCCATCCCAAACCCACTCACCGGAACTCCCTTGCCGGCAGCACCCGGACAAAGTTCCCACTAAAAAAAGA ACCTGGCCATGTATCTTCCACGTCAGCACCACCACCAACACTGCAAACAATTACAACCTCCCATGATAAAAAACCGGTGGCCTGTTCGTCTCCGGTGGCA GGTTCATCCCCGACGACCCCGCTCTCGGCCACGATGGACCACGAAGCCGCAGTCAACTTTCGTACGGCTACTGCGGATCATGATATGATGACGACGAGGA TCACGAGCGCTGATCACGTGGCGTACCTGCAGGATCAGTTCGAGAGCGGTGACGATGATGATGATGATGATGATGATGCGAACGTGGAGGAGTTTGGTTA TAGTCTTGATGATGACGAAGGTGATGACGTGGACGACGGTAATTTTATTCGCGGTAGTAATAACAGGGAATTATTTGGGGATGACTTCTCTTCTTGGATA TTCGGTAATAGCTCTTCCACCGGCGGCGGGGGGTGTTAG
AA sequence Show only first row Show all	>Lus10027538 pacid=23144448 polypeptide=Lus10027538 locus=Lus10027538.g ID=Lus10027538.BGIv1.0 annot-version=v1.0 MANNDDWDLTAIVRSCTTSAGGPNEESDRNNPLAGLTFETEPDPFAFPDLPHSGFQELLQDSYDNKPFSSGQRDLIIPPPPPPLTPNTSDFGGQSQRRTE VTSPRVVVVRNQQQQTTQDLGNRHQRQMQGSSSSGYMGGGSSSSNNLAFSFSSSLRSIQSQPATSRPRKKKNNQKRLVVQVTADNLSNDVWAWRKYGQKP IKGSPYPRNYYRCSSTKGCGARKQVERSTTDPNMFIISYAGDHTHPKPTHRNSLAGSTRTKFPLKKEPGHVSSTSAPPPTLQTITTSHDKKPVACSSPVA GSSPTTPLSATMDHEAAVNFRTATADHDMMTTRITSADHVAYLQDQFESGDDDDDDDDDANVEEFGYSLDDDEGDDVDDGNFIRGSNNRELFGDDFSSWI FGNSSSTGGGGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027538 [exp]	0	1
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10039711 [exp]	1.4	0.9314
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10039712 [exp]	3.5	0.8941
AT1G70570			anthranilate phosphoribosyltra...		Lus10006201 [exp]	3.7	0.9171
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030878 [exp]	12.3	0.8810
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041894 [exp]	15.2	0.8919
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	16.6	0.9137
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10037552 [exp]	19.0	0.9053
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	21.2	0.9023
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	28.3	0.8886
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	31.6	0.8911

Compare expression of checked genes

Lus10027538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.