Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52840 275 / 3e-96 NADH-ubiquinone oxidoreductase-related (.1) AT4G28005 111 / 4e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039296 [exp] 330 / 6e-118 AT5G52840 271 / 1e-94 NADH-ubiquinone oxidoreductase-related (.1) Lus10014951 [exp] 310 / 5e-110 AT5G52840 264 / 1e-91 NADH-ubiquinone oxidoreductase-related (.1) Lus10038835 [exp] 308 / 3e-109 AT5G52840 264 / 1e-91 NADH-ubiquinone oxidoreductase-related (.1) Lus10043440 [exp] 203 / 1e-65 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071900 [exp] 273 / 3e-95 AT5G52840 265 / 5e-92 NADH-ubiquinone oxidoreductase-related (.1) Potri.017G149100 [exp] 246 / 8e-85 AT5G52840 250 / 3e-86 NADH-ubiquinone oxidoreductase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04716 [flax] [poplar] ETC_C1_NDUFA5 ETC complex I subunit conserved region
Representative CDS sequence Show only first row Show all	>Lus10027539 pacid=23144614 polypeptide=Lus10027539 locus=Lus10027539.g ID=Lus10027539.BGIv1.0 annot-version=v1.0 ATGTTCCTGCGGGCGGTGGCGCGGCCGCTAATGGCCAAGGTGAAACAGACGACGGGGATCGTCGGTCTCGAAGTGGTGCCCAACGCTCGAGAAGTACTGA TCGGCCTTTACAACAAAACCCTAAATGAGATTCAGGCGGTCCCTTCCGATGAAGGATACCGGAAGGCGGTTGAGAGCTTTACCAGACACAGGCTGAATGT TTGCCAGGAGGAAGAGGATTGGGAGTCGATCGAGAAGAAGCTTGGTTGCGGTCAGGTCGAGGAGCTGATTGAGGAGGCCCAGGACGAGCTCATGCTCATC GGGAAAATGATCGAGTGGGATCCCTGGGGTGTTCCTGATGACTATGAATGCGAGGTCATAGAGAACGACGCTCCAGTTCCGAAGCACGTCCCTCTACATC GACCCGGTCCTCTCCCCGAGGAATTCTACACCACGCTGGGGACCTTGCAATCGAACTCCAAGGAAGCACCTGCTGTCGCCTCCGGTGAATCAAAGGTACT GGAGTAG
AA sequence Show only first row Show all	>Lus10027539 pacid=23144614 polypeptide=Lus10027539 locus=Lus10027539.g ID=Lus10027539.BGIv1.0 annot-version=v1.0 MFLRAVARPLMAKVKQTTGIVGLEVVPNAREVLIGLYNKTLNEIQAVPSDEGYRKAVESFTRHRLNVCQEEEDWESIEKKLGCGQVEELIEEAQDELMLI GKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFYTTLGTLQSNSKEAPAVASGESKVLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	0	1
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	2.2	0.9398
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	3.0	0.9269
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	3.2	0.9364
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	3.9	0.9342
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	4.5	0.9319
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	4.6	0.9282
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037958 [exp]	4.7	0.9213
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10007534 [exp]	5.5	0.9225
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	5.9	0.8979
AT3G59840			unknown protein		Lus10030936 [exp]	6.6	0.9103

Compare expression of checked genes

Lus10027539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.