Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11260 390 / 1e-135 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) AT4G23570 384 / 4e-133 SGT1A phosphatase-related (.1.2.3) AT2G42810 64 / 4e-11 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 61 / 3e-10 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G17970 61 / 5e-10 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G12400 60 / 1e-09 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G04710 57 / 1e-08 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT1G62740 57 / 1e-08 Hop2 Hop2, stress-inducible protein, putative (.1) AT3G07370 55 / 2e-08 ATCHIP, CHIP carboxyl terminus of HSC70-interacting protein (.1) AT1G12270 56 / 3e-08 Hop1 Hop1, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039297 [exp] 676 / 0 AT4G11260 409 / 5e-143 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10024680 [exp] 448 / 4e-158 AT4G11260 459 / 2e-162 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10032305 [exp] 397 / 1e-138 AT4G11260 417 / 9e-147 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10028919 [exp] 61 / 9e-10 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 61 / 1e-09 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 60 / 2e-09 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 59 / 2e-09 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10003260 [exp] 56 / 2e-08 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10018004 [exp] 55 / 5e-08 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071100 [exp] 499 / 1e-178 AT4G11260 385 / 1e-133 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.017G149800 [exp] 493 / 5e-176 AT4G11260 419 / 1e-146 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.003G113400 [exp] 61 / 4e-10 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.008G156500 [exp] 60 / 8e-10 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G119500 [exp] 57 / 8e-09 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.014G141800 [exp] 56 / 2e-08 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.002G248700 [exp] 55 / 3e-08 AT3G07370 387 / 7e-137 carboxyl terminus of HSC70-interacting protein (.1) Potri.012G046900 [exp] 55 / 5e-08 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 54 / 7e-08 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 54 / 1e-07 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain CL0190 [flax] [poplar] PF05002 [flax] [poplar] SGS SGS domain
Representative CDS sequence Show only first row Show all	>Lus10027540 pacid=23144477 polypeptide=Lus10027540 locus=Lus10027540.g ID=Lus10027540.BGIv1.0 annot-version=v1.0 ATGGCGTCCGATCTTGAGAAGAAGGCCAAGGAGGCGTTCATCGACGACCACTTCCAGCTCGCCGCCGATCTCTACTCCCAGGCTATCGATCTTAGCCCTA ACAGCCCTGACCTCTTCGTTGACCGCGCTCAGGCCAATATCAAACTCGGCTATTTTACCGAGGCGGTTTCTGATGCGAACAAAGCAATTCAATTGGACTC TTCAATTGCCAGAGCATATTTACGCAAGGGCGTAGCGTGTATGAAGCTAGAAGAGTATCAAACTGCTAAGGTAGCCCTTGATACAGGTGTAACTTTGGCG TCCGATGACCAAAAATTCAGATTCACTGACTTGATCAAAGAATGTGAAGATCGCATTGCTGAGGAACTAGGCCAGATTCCGAAACAGGACGTAGAACCTC CATCAAATTCTGCACCGATACAAGAGGAACCACCGAATGGTGTCTCCGATCAGGCACAAAATGTGATTCCACCCAAACCCAAGTACAAGCATGATTTCTA TCAGAAGCCTGAGGAGGTTGTTGTGACTATATTTGCAAAGGGTGTGCCAGCTGACCGTATCTCGGTTGACTTTGGCGAGCAAATTCTAAGCGTTAGAATA GACTTTCCTGAGGAAGATGCATACCATCTCCAGCATCGTTTGTTCGGAAAGATTGTACCTGCCAACTGCAAGTACATCGTATTGTCTACAAAAGTTGAAA TCCGTCTTGCAAAAGCTGAGCCTATTCACTGGACGTCTCTAGAATACAAGGACACAGCAGTTGTCAGAAGGGTGGACACTTCCTCTGAGGTTGCCAAGAG ACCAGCATATCCATCCTCAAAGGGAACCAAAGTGGACTGGGATAAACTTGAAGCCCAAGTGAAGCAGGAGGAAAAGGAGGAACAGCTGGACGGTGATGCG GGTCTGAACAAGTTCTTCAGGGAAATATACAAGGATGCCGACGAAGACACGAGAAGAGCGATGCAGAAATCTTTCGTGGAGTCGAACGGGACGGTGCTGT CAACCAACTGGAAGGACATAGGAGCTAAGAAGGTGGAAGGAAGTGCTCCTGATGGTATGGAGATGAGGAAATGGGAGTACTGA
AA sequence Show only first row Show all	>Lus10027540 pacid=23144477 polypeptide=Lus10027540 locus=Lus10027540.g ID=Lus10027540.BGIv1.0 annot-version=v1.0 MASDLEKKAKEAFIDDHFQLAADLYSQAIDLSPNSPDLFVDRAQANIKLGYFTEAVSDANKAIQLDSSIARAYLRKGVACMKLEEYQTAKVALDTGVTLA SDDQKFRFTDLIKECEDRIAEELGQIPKQDVEPPSNSAPIQEEPPNGVSDQAQNVIPPKPKYKHDFYQKPEEVVVTIFAKGVPADRISVDFGEQILSVRI DFPEEDAYHLQHRLFGKIVPANCKYIVLSTKVEIRLAKAEPIHWTSLEYKDTAVVRRVDTSSEVAKRPAYPSSKGTKVDWDKLEAQVKQEEKEEQLDGDA GLNKFFREIYKDADEDTRRAMQKSFVESNGTVLSTNWKDIGAKKVEGSAPDGMEMRKWEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10027540 [exp]	0	1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10039297 [exp]	1.4	0.9338
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	4.7	0.9315
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	5.5	0.9187
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	5.7	0.9148
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	6.0	0.9233
AT4G26210			Mitochondrial ATP synthase sub...		Lus10007995 [exp]	8.5	0.8997
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	9.6	0.9297
AT5G16950			unknown protein		Lus10021093 [exp]	10.7	0.8989
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	12.2	0.9084
AT5G47570			unknown protein		Lus10000735 [exp]	12.8	0.8863

Compare expression of checked genes

Lus10027540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.