Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51160 296 / 3e-104 SNARE-like superfamily protein (.1.2) AT5G02280 72 / 2e-16 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039298 [exp] 317 / 9e-113 AT1G51160 323 / 5e-115 SNARE-like superfamily protein (.1.2) Lus10023793 [exp] 71 / 7e-16 AT5G02280 261 / 2e-91 SNARE-like superfamily protein (.1) Lus10010836 [exp] 69 / 4e-15 AT5G02280 259 / 2e-90 SNARE-like superfamily protein (.1) Lus10024390 [exp] 68 / 6e-15 AT5G02280 263 / 4e-92 SNARE-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G149900 [exp] 301 / 1e-106 AT1G51160 332 / 2e-118 SNARE-like superfamily protein (.1.2) Potri.009G069800 [exp] 72 / 1e-16 AT5G02280 267 / 1e-93 SNARE-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF04099 [flax] [poplar] Sybindin Sybindin-like family
Representative CDS sequence Show only first row Show all	>Lus10027541 pacid=23144522 polypeptide=Lus10027541 locus=Lus10027541.g ID=Lus10027541.BGIv1.0 annot-version=v1.0 ATGCAGTTCTTCGGAGGCTCCGACATCAGCCCATCGCCGCCAGCACCAACCGCTCCGGGAAACAATGCGAATATGATTTACATCTTCAATAGGAACGGCG TGTGTCTGCTGTACAAGGAGTGGAATAGGCCGCTCCACACCCTCAACGCCCAGCAGGATCACAAGCTCATGTTTGGTTTGCTCTTCTCCCTCAAGTCGCT GACAGCTAAAATGGATCCCACCAATGCTGAGAAAGGGAACCTTGGGGTGCCTCAGTTACCCGGCCAGGGTTGTTCATTTCACAGCTTTCGTACCAACACT TACAAGCTTAGTTTCATGGAAACCCCTTCTGGTATAAAGCTTATCTTGGTTACTCATCCTAAGACTGGTGATCTAAGGGACTCCCTCAAGTACATTTACA ATTTGTATGTTGAGTATGTCGTCAAGAACCCACTTTACACTCCTGGAACGCCGGTCAGGTGTGAACTTTTCGACACTGCCCTTGACCAATATGTAAGAAG CATTGCTTAA
AA sequence Show only first row Show all	>Lus10027541 pacid=23144522 polypeptide=Lus10027541 locus=Lus10027541.g ID=Lus10027541.BGIv1.0 annot-version=v1.0 MQFFGGSDISPSPPAPTAPGNNANMIYIFNRNGVCLLYKEWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLPGQGCSFHSFRTNT YKLSFMETPSGIKLILVTHPKTGDLRDSLKYIYNLYVEYVVKNPLYTPGTPVRCELFDTALDQYVRSIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	0	1
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	1.0	0.9443
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	2.0	0.9347
AT3G21400			unknown protein		Lus10037507 [exp]	4.2	0.8971
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	8.5	0.9001
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	9.7	0.9071
AT3G45770			Polyketide synthase, enoylredu...		Lus10020160 [exp]	9.9	0.8933
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	10.5	0.9132
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	10.8	0.9115
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	13.7	0.9050
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	15.7	0.8843

Compare expression of checked genes

Lus10027541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.