Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16520 400 / 2e-136 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT4G01070 256 / 4e-80 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01390 240 / 8e-74 UDP-Glycosyltransferase superfamily protein (.1) AT1G01420 239 / 1e-73 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT2G18570 231 / 1e-70 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 228 / 2e-70 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 230 / 3e-70 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT3G21790 228 / 4e-69 UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 223 / 3e-67 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21800 219 / 9e-66 UGT71B8 UDP-glucosyl transferase 71B8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039301 [exp] 607 / 0 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039299 [exp] 366 / 4e-126 AT3G16520 192 / 1e-58 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 364 / 8e-122 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10029453 [exp] 270 / 2e-85 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 257 / 3e-80 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 253 / 1e-78 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 252 / 3e-78 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 246 / 4e-76 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039037 [exp] 241 / 3e-74 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G150000 [exp] 478 / 1e-166 AT3G16520 503 / 1e-176 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 472 / 4e-164 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 468 / 1e-162 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 466 / 8e-162 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 461 / 4e-160 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 457 / 3e-158 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150100 [exp] 445 / 1e-153 AT3G16520 451 / 9e-156 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G036000 [exp] 383 / 1e-129 AT3G16520 385 / 1e-130 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G035800 [exp] 380 / 2e-128 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027800 [exp] 378 / 2e-127 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10027542 pacid=23144609 polypeptide=Lus10027542 locus=Lus10027542.g ID=Lus10027542.BGIv1.0 annot-version=v1.0 ATGGTGGAGCTCGACCGTCTCATCCTAACCCGCCGTCCTTCACTATCAATCCACATAATCCTCGCCCCCTCCCCTTACCAATCCACCGTCACTGCCCCCT ACATCTCCACCGTCTCCGCCCTCATTCCCTCGATCACCTTCCACCACCTCCCTCCTCTTCCTCCGGCCACCGTCGCATCGATCCACCACGAGATACTCAT GATCGAAACCCTCCGCCTCAGCCAGCCGAATCTCCGCTCCGCCCTGGCGTCCATAATCTCGCAGTACGATGTCGTTCCTGCCCTGATCTTTGATTTCTTC TGCACCACTGTAGCCATCTCTGTCGCCGACGAGCTCGGTGTCCCCGACTACCAGTATTCACCCTCTGGCGCCGCCAGCGTTGGATTCGTACTCCATCTCC CCACCCAACACGAGAAATCCGCCGAGAGCTTCAAAGACCGTAATTCAGGGCTGGAAATTCCCGGAGTACCGAAATTGGCCGCGAGGGATGTGCCGGAGAT ACTCGCCGACCGGAACCACGGTGTGTACTGCAGCTTCGTCGAGTTTGGGACTCAATCGCGCCGATCCGCCAGACTGATAGTCAACACGTTCGAGTCCCTG GAGAGTAGAGCGGTGAAAGCGATTTCCGAGGGGTTGTGCATTCCCAACGCTCCAACTCCGCCGATCTACTGCGTCGGACCGTTGATCGCCAGCGGAGACA GGAGCAGAGCCACCGCCGACGACGACAATGATTGTCTGACGTGGCTCGATTCTCAGCCGAAACGAAGCGTCGTTTTCTTGTGCTTTGGAAGCTTGGGTAT CTTCTCGAGGAAGCAGCTGAAAGAAATGGCGATCGGATTGGAGAAAAGCGGCGAGAAATTTTTATGGGTGGTGCGGGACCCACCGTCGGTCAACGATGAT GACAATCGAAACGTCACCGTTTTGGAGGCGAAAGAAGATGAAGGATTGGAGACTCTGCTTCCCGAGGGGTTCTTGGAGAGGACTAAAGGACGTGGGCTTG TAGTGAAATGCTGGGCTCCGCAAGTGGAGGTACTAGGCCATGGTTCCGTTGGCGGTTTCGTGACTCACTGTGGGTGGAATTCGGTGTTGGAATCGATTAC GGCCGGAGTCCCGATGGTGGCGTGGCCGTTATACGCGGAACAGAAGTTGAATCGAGTGATGTTGGTGGAAGAGATTAAGATTGCATTGCCAATGGAAGAG AGCAATGAGAGCGGGTTTGTGAAAGCGGAGGAGGTAGAGAGGCGAGTTAAGGAGTTGATGGGATTGGAGGGAAGGGGTGAGTTGGTGAGGCGTCGAACGA TCAAGATGAAGAATGCGGCAGAGCGTGCAGTGGGGGACGGTGGTTCTTCTCGTGTGTCGTTGAATCAACTAGTCAATGCGTGGATTGAAAAATAA
AA sequence Show only first row Show all	>Lus10027542 pacid=23144609 polypeptide=Lus10027542 locus=Lus10027542.g ID=Lus10027542.BGIv1.0 annot-version=v1.0 MVELDRLILTRRPSLSIHIILAPSPYQSTVTAPYISTVSALIPSITFHHLPPLPPATVASIHHEILMIETLRLSQPNLRSALASIISQYDVVPALIFDFF CTTVAISVADELGVPDYQYSPSGAASVGFVLHLPTQHEKSAESFKDRNSGLEIPGVPKLAARDVPEILADRNHGVYCSFVEFGTQSRRSARLIVNTFESL ESRAVKAISEGLCIPNAPTPPIYCVGPLIASGDRSRATADDDNDCLTWLDSQPKRSVVFLCFGSLGIFSRKQLKEMAIGLEKSGEKFLWVVRDPPSVNDD DNRNVTVLEAKEDEGLETLLPEGFLERTKGRGLVVKCWAPQVEVLGHGSVGGFVTHCGWNSVLESITAGVPMVAWPLYAEQKLNRVMLVEEIKIALPMEE SNESGFVKAEEVERRVKELMGLEGRGELVRRRTIKMKNAAERAVGDGGSSRVSLNQLVNAWIEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10027542 [exp]	0	1
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	15.2	0.8279
AT2G41750			DTW domain-containing protein ...		Lus10012192 [exp]	23.1	0.8421
					Lus10024524 [exp]	33.5	0.8032
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	57.5	0.8098
AT5G56040			Leucine-rich receptor-like pro...		Lus10005847 [exp]	58.0	0.7881
AT4G27870			Vacuolar iron transporter (VIT...		Lus10011838 [exp]	59.2	0.8180
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10026341 [exp]	90.9	0.7760
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	106.9	0.8054
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	113.9	0.7764
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10029425 [exp]	125.3	0.7826

Compare expression of checked genes

Lus10027542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.