Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49475 62 / 6e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 62 / 7e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 62 / 9e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 63 / 2e-10 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G33280 57 / 1e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT2G24650 52 / 7e-07 B3 REM13 DNA binding;DNA binding;sequence-specific DNA binding transcription factors (.1) AT2G24690 43 / 0.0007 B3 REM11 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039303 [exp] 678 / 0 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015266 [exp] 120 / 2e-28 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10038189 [exp] 103 / 7e-25 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 99 / 6e-23 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 99 / 3e-22 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 91 / 9e-20 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025388 [exp] 86 / 1e-18 AT4G33280 70 / 8e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 82 / 4e-17 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 79 / 1e-15 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 81 / 6e-16 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 77 / 1e-15 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 70 / 1e-13 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 69 / 3e-12 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 64 / 9e-11 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.002G129800 [exp] 59 / 5e-09 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 58 / 8e-09 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 56 / 2e-08 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 54 / 2e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 50 / 2e-06 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10027543 pacid=23144493 polypeptide=Lus10027543 locus=Lus10027543.g ID=Lus10027543.BGIv1.0 annot-version=v1.0 ATGCCTACAGACCCATTCCGTGAAGGAAAGCTGCAACTTCCAGAAAAGTTTGCGAGAGAGCATGGATCCGAGCTGGCAAATGAGGTACTCCTCAAGCTTC CAAACGGAGCAGAATGGCCGGTCAGTGTGGTTAAAAGTAGCCGGAAGAAGATATGGTTTGACAAGGGTTGGTCAAAATTTGCCAAGTTTTACTCTCTCGA ACCAACTAATTTCCTGGTTTTCCAGCTGGCTGACCATAACCATTTCAAAGTGATGATAGTTGACACCTCTGCAACCGGGATTAATTACTCCAAAAAGAAA TCTAATGCCAATGTTGTTCCTGAAACGAATGAAGCTGTGGAAAGGAACCAACCCTCTTCCCCAAAAGCCCAAGGAACTGCTAGTGGTATGAAAGCAGATC GAAATCGAAGCTCCAATCCCCGGAGGCCGAAACCATTGACAGTTGACAAGGAAGCTAGTGGAATCCTTGGCAAAGCGAATGTGTGTTTGAATCTGAAAAT CCCTCCTTCACGTGAGTTTATTTCAGTGTGCTTGATGTTATATGTTGGTTGGTTTCTTTTCAAATGGCAGAATGTGCCTGTCGCTTTTTTCGAGACAAAT TTCGTAGAGAACAGTGTAGACATCTTCCTTCAGCTTGCCAATGTTGGACTCTGGAAGGGTAAGTACTTTGTCATAGATTATGGCTATGCGAAGAGAGCTT ATTTTGAAGCAAAATCTTGGGGTTCATTTGCACGAGCTAACTGTTTGAGAGTTGGCGATATGTGCGCTTTTGAGCTGGTGGAAGTTGACAATGAGGCTAG ATTCAATGTGGTTATTTTCCGGACTTCTCCTAGCCTTGTTGGGAATGGAAAAACCACTGTGATTCCTGCAACTGAATCTGGCTTTACCTACAAACAACAA AAACATGGCCATTCTCCAAGAACAAGTGATAAACAACACTTAACATCTCCCCACCCTATTAAGCTGAGAAGAAGAATTGGTGTGAAAAGAACTGCTACCA CTTCTAAAGGTCAAAATCAAAGCAGGGTTCCTCGTATAGAAGCACCACTAATAATTGCTAAGAAAGCTGGTTTTCTTGCAAGAGCCAAGGCTGTTTTCAC ATCTGACAGCCCTACTACGAGACTGTTTGTTGAGACGAATTTCGTGAACCAATGCGGAGATATCGTACTCCAAGTCCCTGGTGTAGGAGGAGAATGGACA GTTAAGTATCTCGTCAGAGGTTCTGGTAATTTGAAGAGAGCTGTTCTCCAAACAGAGTCCTGGACGTCATTTGCAGAGGACACCGGTTTAAAAGTTGGCG ATGTGTGTGCATTTGAGCTGGTGGAATTTGATACTAAGCCTAGATTGAATGTGGTCATTTTCCGAGCTTCCCGAGTTGCAAATCGCTGCCACCGATCCGG GATAGGACCAACGACCAAAGCGACAACCTCCAAGAACTCAACATCTCCTGAATGGAAATCAGGCTGTACCAGCAAATCAGAGAGACATGAATCATCTCAC GGAAGTACAGAAGGGCTCCGGACTGGGGAATTGGGTGATGAGGTGGCATAA
AA sequence Show only first row Show all	>Lus10027543 pacid=23144493 polypeptide=Lus10027543 locus=Lus10027543.g ID=Lus10027543.BGIv1.0 annot-version=v1.0 MPTDPFREGKLQLPEKFAREHGSELANEVLLKLPNGAEWPVSVVKSSRKKIWFDKGWSKFAKFYSLEPTNFLVFQLADHNHFKVMIVDTSATGINYSKKK SNANVVPETNEAVERNQPSSPKAQGTASGMKADRNRSSNPRRPKPLTVDKEASGILGKANVCLNLKIPPSREFISVCLMLYVGWFLFKWQNVPVAFFETN FVENSVDIFLQLANVGLWKGKYFVIDYGYAKRAYFEAKSWGSFARANCLRVGDMCAFELVEVDNEARFNVVIFRTSPSLVGNGKTTVIPATESGFTYKQQ KHGHSPRTSDKQHLTSPHPIKLRRRIGVKRTATTSKGQNQSRVPRIEAPLIIAKKAGFLARAKAVFTSDSPTTRLFVETNFVNQCGDIVLQVPGVGGEWT VKYLVRGSGNLKRAVLQTESWTSFAEDTGLKVGDVCAFELVEFDTKPRLNVVIFRASRVANRCHRSGIGPTTKATTSKNSTSPEWKSGCTSKSERHESSH GSTEGLRTGELGDEVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027543 [exp]	0	1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	4.1	0.7963
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	14.5	0.7334
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	14.8	0.7348
AT2G40430			unknown protein		Lus10037530 [exp]	15.8	0.7734
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	16.9	0.7751
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	21.1	0.7571
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	23.7	0.7531
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	24.7	0.7477
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	29.2	0.7255
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	30.3	0.7612

Compare expression of checked genes

Lus10027543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.