Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027544 pacid=23144586 polypeptide=Lus10027544 locus=Lus10027544.g ID=Lus10027544.BGIv1.0 annot-version=v1.0 ATGGCAGCGGTTGGATCCGATCGCTTTGCAGCCAGTTCATGGTGGCCCATCCTCCACCCCTTCACTACCTCCTCCGTTCTCCGCTCAGTTGTGCAGGTCC AGCGCTGCAATACCGGCGAAATCTCACCGATCTCTTTCCCATTACTCTCAATCTGCCAAGGTCTGCATTTTTTCTTGGTTTGTGGGTCGATGGCAGCTGC CCATTCACAAGCTGAGAAGAGCGCCCAGGGTGGGATTAAGAGGTTTGCTAGTCGTCAGCAAGCTTCTGGCTCTAACGTGGGCCACTTCCAGGCGCTTACA CCTCTGCACGTGCCCTCAGCTTCTTTGCATCCTTTGCGCAGTGGGACTGTTGGCTCAGCTCCTCCCATGACCGCAATTACAAGTTTCCTGGCCCATGACA AAATTTCCCCAATCGAGGAGCTTCCTCCCTCTAACTCTAGTTTTCCAAAGGGTCATCCGGCAACACATTTCAACTCCTTGGATCATGTTAGATCCACCCT GGCCCATGCTACCTCTGATCGTCTCCCTAAGACGGACATAACCAACCAAGCCCAACCCAAGCGTCTTTGCACTACATGCCTTGGCATCTCTCCGACTAAT TCGACGCAACTTCTTGGAGTTGGACGTCACGTCCCATAG
AA sequence Show only first row Show all	>Lus10027544 pacid=23144586 polypeptide=Lus10027544 locus=Lus10027544.g ID=Lus10027544.BGIv1.0 annot-version=v1.0 MAAVGSDRFAASSWWPILHPFTTSSVLRSVVQVQRCNTGEISPISFPLLSICQGLHFFLVCGSMAAAHSQAEKSAQGGIKRFASRQQASGSNVGHFQALT PLHVPSASLHPLRSGTVGSAPPMTAITSFLAHDKISPIEELPPSNSSFPKGHPATHFNSLDHVRSTLAHATSDRLPKTDITNQAQPKRLCTTCLGISPTN STQLLGVGRHVP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027544 [exp]	0	1
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	1.0	0.8204
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	3.7	0.8145
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	4.6	0.8114
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10017529 [exp]	4.9	0.7283
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037391 [exp]	5.3	0.7566
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	7.5	0.7751
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016187 [exp]	7.7	0.7570
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	8.1	0.7731
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041226 [exp]	9.5	0.7418
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	11.4	0.7228

Compare expression of checked genes

Lus10027544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.