Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52860 649 / 0 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 640 / 0 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G19410 426 / 6e-142 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT2G13610 376 / 2e-122 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 363 / 5e-118 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT3G55090 279 / 2e-84 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G53510 261 / 2e-77 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT2G39350 260 / 4e-77 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55110 257 / 2e-76 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55130 254 / 6e-75 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039304 [exp] 649 / 0 AT5G52860 504 / 8e-177 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 429 / 1e-142 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 420 / 2e-139 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 422 / 3e-139 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 411 / 6e-136 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 334 / 6e-106 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 332 / 4e-105 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 273 / 7e-82 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 242 / 2e-70 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G027600 [exp] 707 / 0 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.009G070100 [exp] 437 / 7e-146 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 400 / 3e-132 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 400 / 6e-132 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 397 / 9e-131 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 387 / 2e-126 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 383 / 1e-124 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 275 / 9e-83 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 272 / 1e-81 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 266 / 2e-79 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10027545 pacid=23144503 polypeptide=Lus10027545 locus=Lus10027545.g ID=Lus10027545.BGIv1.0 annot-version=v1.0 ATGGATGAAACTCAACAACCACCACCTCCAAACCCTCCTCCACAACCCAAAATTCCAACTTACAAGCTAACCGCCTCATCAATCTCCTACTCCAAATCCA CCACCATCTCCTCCTCCACCACCTCCACGTCACCATTCCACCTCCTCTTCAAACCATGCTCCTCAACCCCACCAACCACCATCCTCAACAATGTCTCCTT CACCGCCTTCCCCTCCGAAATCCTCGCCATCGTCGGCCCCAGTGGGGCCGGAAAGTCCACCCTCCTCGACATCCTTGCAGCCCGAACCTCCCCTACCTCC GGCTCCCTCCTCTTGAACTCATCCCCCATCAACCCTTCCTCCTTCCGGAAGCTCTCCGCCTATGTCCCCCAACACGATGCTTCCCTCCCTCTCCTCACCG TCTTCGAGACCTTCGCCTTCTCCGCCCGCCTTCTAAACCCTAGCTCCTCCTCCGAAATCCCAACCCTAGTCGCCTCCCTCCTCGAAGAGCTCTCTTTGGC CCACGTGGCAAACACCAGGCTGGCCGAGGGAATACTTTCCGGCGGGGAGCGCAGGAGAGTCTCCATTGGCCTGGCAGTACTCCATGACCCTGGAGTGCTG CTCCTTGACGAGCCAACTTCTGGACTAGACAGCAAGTCGGCTCTCAGCGTGGTCCAGACCGTGAAGTACATTGCTACTTCACGGAAAAGGACCGTGGTGT TGTCGATTCATCAGCCTGGATTCAAGATCCTCTCCATGATCGATCGTGTCCTTCTGTTACGTAAAGGAAATGTCGTTCATTACGGATCGCTTCCTTCTTT GGAGAGTTACTTGCTAGGTAAGGGATTCACTCTTCCTGACCAGCTTAATGCTCTTGAGTATGCCATGGAGATCATGGGCCAGCTGTCGCCTGATGATGAT CCTACGGCGGTCTCTCCCTCACCTGATCAAATCTCTCCTACCGGTGATCGTGGTTGTGACGACGACGACCTCGTTTTGATCAAGTACAGAAGCTCGCGGA TCCATGAGATTTCAGCCTTGCATTCCAGGTTATGGAAGATCATCTTTCGAACGAAGCAGCTACTCCTGACCAACACGATCGAAGCATTAGTCGTGGGGCT CGTACTCGGTACGATCTACATCAACATAGGAATAAACAAACAAGGAATCGAAAAACGTTGCGGCCTCTTCGCCTTCACCCTCACATTCCTCCTCTCCTCC ACGACCGAAACCCTACCGATCTTCATCAACGAGCGTCCCATCATCCTCCGCGAAGCATCCGGTGGCCTATACCGAATCTCTTCCTACTTACTAGCCAACA CATTGGTATTCCTACCTTACTTTCTCGTGGTCTCCATTATCTATTCGGTCTCCGTCTACTTCCTCGTTGGTCTCTGCGCGACCTGGCAGGCGTTCGCGTA CTTTCTCGTTGTAGTATGGATCATTTTGCTCATGGCGAACTCGTTCGTCCTGTTTCTAAGCTCGGTGGCCCCCAATTACATCGCGGGCACCACGTTGGTC ACCGTGATCCTGGCCGGGTTCTTCCTCTTCTCCGGATACTTCATATCGGAGTCAAGCATGCCCAAGTATTGGGTATTCATGCATTACATGTCAATGTACA AATATGCCCTTGACGCGCTTCTAGTCAACGAGTATTCTTGTCATGTGAATGAGTGCTTTGTTTGGTATGGTGGTGAGGGTAGTAGTGGAATTGGCACTGC TGCATGCGTGGTTACCGGTGCTGACGTGTTGAAGCAGAAAGGGATCGGAGAGAAGCTGAGGTGGAGGAATGTCTACGTGTTGATTGGGTTCTTTGTCTTT TACCGCTTGCTTTGCTTGGTGGCGTTGACCAGAAGGATTTCCAGGTCCAAAAAATAA
AA sequence Show only first row Show all	>Lus10027545 pacid=23144503 polypeptide=Lus10027545 locus=Lus10027545.g ID=Lus10027545.BGIv1.0 annot-version=v1.0 MDETQQPPPPNPPPQPKIPTYKLTASSISYSKSTTISSSTTSTSPFHLLFKPCSSTPPTTILNNVSFTAFPSEILAIVGPSGAGKSTLLDILAARTSPTS GSLLLNSSPINPSSFRKLSAYVPQHDASLPLLTVFETFAFSARLLNPSSSSEIPTLVASLLEELSLAHVANTRLAEGILSGGERRRVSIGLAVLHDPGVL LLDEPTSGLDSKSALSVVQTVKYIATSRKRTVVLSIHQPGFKILSMIDRVLLLRKGNVVHYGSLPSLESYLLGKGFTLPDQLNALEYAMEIMGQLSPDDD PTAVSPSPDQISPTGDRGCDDDDLVLIKYRSSRIHEISALHSRLWKIIFRTKQLLLTNTIEALVVGLVLGTIYINIGINKQGIEKRCGLFAFTLTFLLSS TTETLPIFINERPIILREASGGLYRISSYLLANTLVFLPYFLVVSIIYSVSVYFLVGLCATWQAFAYFLVVVWIILLMANSFVLFLSSVAPNYIAGTTLV TVILAGFFLFSGYFISESSMPKYWVFMHYMSMYKYALDALLVNEYSCHVNECFVWYGGEGSSGIGTAACVVTGADVLKQKGIGEKLRWRNVYVLIGFFVF YRLLCLVALTRRISRSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	1.7	0.9251
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	2.8	0.9367
AT1G19990			unknown protein		Lus10033141 [exp]	2.8	0.9335
AT3G02710			ARM repeat superfamily protein...		Lus10031364 [exp]	4.9	0.9015
AT5G03670			unknown protein		Lus10035565 [exp]	4.9	0.9206
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	7.4	0.9214
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	8.4	0.9206
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	8.5	0.9158
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	9.8	0.9053
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10010405 [exp]	10.0	0.9025

Compare expression of checked genes

Lus10027545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.