Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52880 205 / 2e-65 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027549 [exp] 524 / 0 AT5G52880 207 / 2e-66 F-box family protein (.1) Lus10039308 [exp] 522 / 0 AT5G52880 211 / 1e-67 F-box family protein (.1) Lus10037278 [exp] 42 / 0.0003 AT5G45360 352 / 1e-121 F-box family protein (.1) Lus10035689 [exp] 42 / 0.0004 AT5G45360 351 / 6e-121 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035500 [exp] 255 / 2e-84 AT5G52880 199 / 1e-62 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10027547 pacid=23144465 polypeptide=Lus10027547 locus=Lus10027547.g ID=Lus10027547.BGIv1.0 annot-version=v1.0 ATGTCGAATCCAGTCGACCGATACCGGGAATTGCGATACGAAGAAGGACTGGCGAACATCCACCGTTACCCGATCGCCTGCAAAGAGCTCAGCACTATTC TCAGGGAAGCTTACTCCGACCTCCCTAAGAATCTCCATTCCATACTCTTCGACGACATTCTCACTGCCTTCCGGCTTCTTCCTGAAATGCAAACACAGAG TGCTGTTTCTGCAGCACATCTTCTATATCAAAGTGCTGAAGCTAAACTTCCTAAGCAGAAGAAGATTTTGGCAGTCTCGGAGTTCAAGCGTGCCAAGGTT GCTCATAAGCGGCGTTCCAAAGCTTTTCGCAAGGAAGAAATTATAGCAGAGCTTCCAGAAGATGTACTTACTCACACCTTCAGCTTCCTCGACACGCAGT CTTTAGCATCGATGGGGAATGTCTGCCAGTCATGGAATGTTGCAGCTAGTAACAACCTCCTCTGGCAAGCTCACTATGCTAAAATTTTCGGGAGCGATAC CAATTCGAAAGGGCAGAAAATGACACGCGACAGTGGCAGCAGTATTGACTGGAAAGAGGCCTTTAAAACAACATACTTTGCTAGTAAGCCCGACAGATTA GCATCTAACCGGGGATACTGCCACAGTTGCAAAGCAGTAGTTTGGCTTGCTGGTATGGAATGCTGCAATGAAGCAAATTGTTCTACGCGAAAGCAATCGA AGAACACTGGAGTCATACACATTACCTCTCGTCAGGTTGTGGAATATCTGTTGCATGGCTCTTCGTCGTTATTTTTGTCGTCGAAGGACAGTGATAGTGA TTCGGAGGACCTCACCATGTGGGCTTACGATTTTAGTTCTTATTAG
AA sequence Show only first row Show all	>Lus10027547 pacid=23144465 polypeptide=Lus10027547 locus=Lus10027547.g ID=Lus10027547.BGIv1.0 annot-version=v1.0 MSNPVDRYRELRYEEGLANIHRYPIACKELSTILREAYSDLPKNLHSILFDDILTAFRLLPEMQTQSAVSAAHLLYQSAEAKLPKQKKILAVSEFKRAKV AHKRRSKAFRKEEIIAELPEDVLTHTFSFLDTQSLASMGNVCQSWNVAASNNLLWQAHYAKIFGSDTNSKGQKMTRDSGSSIDWKEAFKTTYFASKPDRL ASNRGYCHSCKAVVWLAGMECCNEANCSTRKQSKNTGVIHITSRQVVEYLLHGSSSLFLSSKDSDSDSEDLTMWAYDFSSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	0	1
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	1.7	0.8236
AT1G35430			unknown protein		Lus10001289 [exp]	2.2	0.7996
AT3G58090			Disease resistance-responsive ...		Lus10009074 [exp]	4.9	0.8048
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	4.9	0.8010
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	6.9	0.7980
AT5G52980			unknown protein		Lus10000151 [exp]	9.2	0.7565
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10042183 [exp]	10.0	0.7580
AT4G01995			unknown protein		Lus10016264 [exp]	11.2	0.7890
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10006715 [exp]	13.2	0.8025
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	13.4	0.7693

Compare expression of checked genes

Lus10027547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.