Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64090 306 / 1e-105 RTNLB3 Reticulan like protein B3 (.1.2) AT4G23630 306 / 2e-105 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT4G11220 305 / 4e-105 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT5G41600 303 / 2e-104 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT2G46170 290 / 3e-99 Reticulon family protein (.1.2) AT3G61560 269 / 5e-91 Reticulon family protein (.1.2) AT3G10260 214 / 1e-69 Reticulon family protein (.1.2.3) AT4G01230 191 / 2e-60 Reticulon family protein (.1) AT3G18260 188 / 1e-59 Reticulon family protein (.1) AT3G10915 132 / 8e-38 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027546 [exp] 443 / 1e-159 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10039307 [exp] 423 / 1e-151 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10014948 [exp] 388 / 5e-138 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 381 / 4e-135 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10032313 [exp] 298 / 6e-102 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10041080 [exp] 289 / 1e-98 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10036405 [exp] 289 / 1e-98 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10028753 [exp] 308 / 3e-98 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017533 [exp] 280 / 7e-95 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035600 [exp] 318 / 2e-110 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 318 / 3e-110 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 317 / 1e-109 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 308 / 2e-106 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 300 / 3e-103 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 288 / 2e-98 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.002G055600 [exp] 224 / 2e-73 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 223 / 5e-73 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.013G160900 [exp] 205 / 5e-66 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.015G044300 [exp] 181 / 1e-56 AT3G18260 251 / 1e-84 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10027548 pacid=23144566 polypeptide=Lus10027548 locus=Lus10027548.g ID=Lus10027548.BGIv1.0 annot-version=v1.0 ATGGCGGACAATGTCAGCCACCACGATTCTCTGGTGGACAAGATCACCGAGAATATTACCAGCCACCATGACGTATCCTCCTCTTCCTCCTCCTCCTCCT CCGATTCCGACGACGACAAGCCGTCCAAGGTCGATGCCGTCAAATCCAAGAGTTACCGTCTCTTCGGCAGAGACAAGCCCGTCCACAAGGTCTTCGGCGG CGGCAAACCTGCTGATGTTCTTCTGTGGAGGAACAAGAAAGTTTCAGGAGCAGTGGTTGGAGTTGCTACTGCAATCTGGATTCTGTTTGAATTGCTTGAA TATCATCTGATCACCCTAGTTTGTCACTTGTCGATTCTTGCTCTGGCCATACTCTTCCTTTGGTCCAACGCTTCCACCTTCATAAACAAGTCACCACCTC AGATTCCTGAAGTTGTGATCCCTGAGAAGTGCATCCTTGAAATTGCATCTGCATTGAGAATCCAATTCAACCGTGGCGTCACAGTTCTTCGCGAGCTTTC ATCCGGGAGAGATATCAAGAAGTTTCTGATTGTGATTGCTGGGTTGTGGTTCATATCCATCATCGGAAGTTGCTGCAACTTCTTGACCTTGTTCTACATA GCGTTCGTGTTGCTGCACACTCTACCCGTGCTCTATGAGAAATACGATGACAAGGTCGATGCATATGCCGAGAAAGCGATGATTGAGCTCAAGAAGCAGT ATGCAGTCTTTGATGCCAAAGTAATGAGTCAAATTCCCAAAGGTCCACTGAAGAAGAAAGATTAG
AA sequence Show only first row Show all	>Lus10027548 pacid=23144566 polypeptide=Lus10027548 locus=Lus10027548.g ID=Lus10027548.BGIv1.0 annot-version=v1.0 MADNVSHHDSLVDKITENITSHHDVSSSSSSSSSDSDDDKPSKVDAVKSKSYRLFGRDKPVHKVFGGGKPADVLLWRNKKVSGAVVGVATAIWILFELLE YHLITLVCHLSILALAILFLWSNASTFINKSPPQIPEVVIPEKCILEIASALRIQFNRGVTVLRELSSGRDIKKFLIVIAGLWFISIIGSCCNFLTLFYI AFVLLHTLPVLYEKYDDKVDAYAEKAMIELKKQYAVFDAKVMSQIPKGPLKKKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10027548 [exp]	0	1
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10015022 [exp]	6.5	0.7646
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10020656 [exp]	7.6	0.8132
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	9.7	0.8265
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10039307 [exp]	10.3	0.7183
AT4G11220		RTNLB2, BTI2	Reticulan like protein B2, VIR...		Lus10027546 [exp]	15.7	0.6867
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	23.3	0.8095
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	24.0	0.8027
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	24.8	0.7756
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10029634 [exp]	33.0	0.7594
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10024323 [exp]	33.5	0.7755

Compare expression of checked genes

Lus10027548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.