Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52880 205 / 3e-65 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027547 [exp] 522 / 0 AT5G52880 208 / 1e-66 F-box family protein (.1) Lus10039308 [exp] 507 / 0 AT5G52880 211 / 1e-67 F-box family protein (.1) Lus10037278 [exp] 42 / 0.0003 AT5G45360 352 / 1e-121 F-box family protein (.1) Lus10035689 [exp] 42 / 0.0004 AT5G45360 351 / 6e-121 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035500 [exp] 253 / 1e-83 AT5G52880 199 / 1e-62 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10027549 pacid=23144475 polypeptide=Lus10027549 locus=Lus10027549.g ID=Lus10027549.BGIv1.0 annot-version=v1.0 ATGTCAAATCCAGTCGACCGATACCGGAAATTGCGATACGAAGAAGGACTGGCGAACATCCACCGTTACCCGATCGCCTGCAAAGAGCTCAGCACTATTC TCAGGGAAGCTTACTCCGACCTCCCTAAGAATCTCCATTCCATACTCTTCTACGACATTCTCACTGCCTTCCGTCTTCTTCCTGAAATGCAAACACAGAG TGCTGTTTCTGCAGCACATCTTCTATATCAAAGTGCTGAAGCTAAACTTCCTAAGCAGAAGAAGATTTTGGCAGTCTCGGAGTTCAAGCGTGCCAAGGTT GCTCATAAACGGCGTTCCAAAGCTTTTCGCAAGGAAGAAATTATAGCAGAGCTTCCAGAAGATGTACTTACTCACACCTTCAGCTTCCTCGACACGCAGT CTTTAGCATCGATGGGGAATGTCTGCCAGTCATGGAATGTTGCAGCTAGTAACAACCTCCTCTGGCAAGCTCACTATGCTAAAATTTTCGGAAGCGATAC AGATTCGAAAGGGCAGAAAATGACAAGCGACAGTGGCAGCAGTATTGACTGGAAAGAGGCCTTTAAAACAACATACTTTGCTAGTAATCCCGACAGATTA GCATCTAACCGGGGATACTGCCACAGTTGCAAAGCAGTAGTTTGGCTTGCTGGTATGGAATGTTGCAATGAAGCAAATTGTTCTACGCGAAAGCAATTGA AGAACACCGGAGTCATACACATTACCTCTCGTCAGGTTGTGGAATATCTGTTGCATGGTTCTTCGGCGTTATCTTTGTCGTCCAAGGACACTGATAGTGA TTCAGAGGACCTCACCATGTGGGCTTATGATTTTAGTTCTTATTAG
AA sequence Show only first row Show all	>Lus10027549 pacid=23144475 polypeptide=Lus10027549 locus=Lus10027549.g ID=Lus10027549.BGIv1.0 annot-version=v1.0 MSNPVDRYRKLRYEEGLANIHRYPIACKELSTILREAYSDLPKNLHSILFYDILTAFRLLPEMQTQSAVSAAHLLYQSAEAKLPKQKKILAVSEFKRAKV AHKRRSKAFRKEEIIAELPEDVLTHTFSFLDTQSLASMGNVCQSWNVAASNNLLWQAHYAKIFGSDTDSKGQKMTSDSGSSIDWKEAFKTTYFASNPDRL ASNRGYCHSCKAVVWLAGMECCNEANCSTRKQLKNTGVIHITSRQVVEYLLHGSSALSLSSKDTDSDSEDLTMWAYDFSSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	0	1
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029004 [exp]	1.0	0.9289
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	2.0	0.9109
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	3.0	0.9076
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	3.5	0.9027
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	5.3	0.8673
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	8.1	0.8963
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	9.0	0.8846
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	9.9	0.8882
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	9.9	0.8740
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	10.6	0.8853

Compare expression of checked genes

Lus10027549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.