Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52882 199 / 6e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 189 / 4e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 184 / 2e-54 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G24860 78 / 8e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 68 / 2e-13 AAA-type ATPase family protein (.1) AT4G02480 68 / 2e-13 AAA-type ATPase family protein (.1) AT1G02890 67 / 3e-13 AAA-type ATPase family protein (.1.2) AT1G50140 48 / 2e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 45 / 1e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027551 [exp] 281 / 2e-90 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 280 / 1e-89 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 175 / 6e-51 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 171 / 1e-49 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 169 / 1e-48 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10005736 [exp] 156 / 9e-46 AT4G28000 148 / 2e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036347 [exp] 61 / 9e-11 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010282 [exp] 61 / 1e-10 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10017405 [exp] 55 / 6e-09 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026900 [exp] 208 / 4e-63 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 207 / 2e-62 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 178 / 4e-52 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 172 / 7e-50 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G094100 [exp] 90 / 6e-21 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.012G096300 [exp] 89 / 2e-20 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 66 / 1e-12 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 64 / 5e-12 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.007G069800 [exp] 50 / 2e-07 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 50 / 4e-07 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027550 pacid=23144577 polypeptide=Lus10027550 locus=Lus10027550.g ID=Lus10027550.BGIv1.0 annot-version=v1.0 ATGGAGAACAAAAGAGCGCTTCTTTCTGCCTTGAGCGTGGGGGTTGGAGTTGGGGTTGGGTTGGGATTGGCATCATCTGGGCAAAACATTAGCAGATGGG CAGTTGGAAATGGCTGCCCAGATGGTGTCTCAGCTGAACAGATTGAGCATGAGTTGATGAGACAGGTCATTGATGGCAGAGACACCAAAATCACCTTTGA TGATTTCCCTTATTTCCTCTGCGAGAGGACTAGAATTTTGTTAATAAGTTCAGCCTATGTCCATCTAAAGGATTATGACTTCTCAAAGCACACCCGCAAT CTTTCACCTGCCAGCAGGACTATCTTGCTCTCCGGACCTTTTGAACTGTATCAGCAAATGCTTGCCAGAGCTTTAGCACATCACTTTGACTCTAAGATTC TGTTGTTGGATGCTACTGATTTTTCCGTCAAGTTGCAAAGCAAATATGGTTGCACTAAAAAGGAACCGTCTCTAAAGAAGTCTCTATCAGAGTTGGCATT GGAAGGAATGTCTGGTTTGCTTGGCTCTTTTGCCATGCTTCTGGCTTGTGTCGAGCTCGAGCTTGTTTGA
AA sequence Show only first row Show all	>Lus10027550 pacid=23144577 polypeptide=Lus10027550 locus=Lus10027550.g ID=Lus10027550.BGIv1.0 annot-version=v1.0 MENKRALLSALSVGVGVGVGLGLASSGQNISRWAVGNGCPDGVSAEQIEHELMRQVIDGRDTKITFDDFPYFLCERTRILLISSAYVHLKDYDFSKHTRN LSPASRTILLSGPFELYQQMLARALAHHFDSKILLLDATDFSVKLQSKYGCTKKEPSLKKSLSELALEGMSGLLGSFAMLLACVELELV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52882			P-loop containing nucleoside t...		Lus10027550 [exp]	0	1
AT5G52882			P-loop containing nucleoside t...		Lus10027551 [exp]	1.0	0.8966
AT5G52882			P-loop containing nucleoside t...		Lus10039309 [exp]	2.8	0.8324
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	9.2	0.8292
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10024555 [exp]	10.8	0.8087
AT5G17910			unknown protein		Lus10020367 [exp]	11.1	0.8532
AT2G29620			unknown protein		Lus10009543 [exp]	12.7	0.8608
					Lus10020368 [exp]	14.0	0.8286
AT5G17910			unknown protein		Lus10009544 [exp]	14.1	0.8192
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	15.3	0.8308
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10041389 [exp]	15.9	0.8067

Compare expression of checked genes

Lus10027550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.