Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06430 483 / 3e-168 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 300 / 1e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 292 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39620 172 / 9e-48 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62670 166 / 7e-45 RPF2 rna processing factor 2 (.1) AT1G63150 165 / 1e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 164 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 164 / 3e-44 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 162 / 5e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 162 / 7e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000862 [exp] 515 / 0 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 499 / 1e-174 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 457 / 5e-162 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 294 / 6e-94 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 289 / 3e-92 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 271 / 2e-85 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039310 [exp] 211 / 2e-65 AT3G22470 226 / 6e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 216 / 1e-63 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 213 / 2e-62 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G098700 [exp] 484 / 6e-169 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G153900 [exp] 478 / 1e-166 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 322 / 4e-105 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 301 / 3e-97 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 184 / 1e-51 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 179 / 1e-49 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 177 / 6e-49 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 177 / 9e-49 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 170 / 1e-47 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 172 / 2e-47 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027552 pacid=23144582 polypeptide=Lus10027552 locus=Lus10027552.g ID=Lus10027552.BGIv1.0 annot-version=v1.0 ATGTCACTCTCCTCCTCTCTCGTTCAAACTCCAATTGGCCGATTAAGTAGTAACTGCTCCTCCTTCCGCCGCCGGCACTCTCTTCCACCGCCGTCGGCCT CTCCCCAGCGACAGTGGAAACAAGGCGAATTTCCCGGAACCACTACCAAGCCTTCCGTCCGCCGCCGCTCCCCTCTAAAAACCGTCAAGAAGAAATTAGA CCGGAAGGAGAAAGCCAAGGCCTGGGTCAACACAATCACCGAAGCCTTCTCTGACTCCGTCGCCACCAAGCAATGGCACACTGCCCTCGAGCTCTTCGAC ATGCTGAAGCAGCAGCCATTCTACAAGCCAAAAGAAGGCACCTACATGAAGCTCCTCGTTCTGTTGGGGAAATCCGGCCAGCCTGACCTTGCACACCAAC TGTTCGACGAAATGCTTCAACAGGGGATTCCACCTTCCCCTGAACTCTACACCTCCCTCCTTGCCGCCTATTCCCGCAGCGGCCTAATCGACAAGGCGTT CTCCATTCTCGAGTTAATGAAGTCCTTGCCGCAATGCCAGCCTGATGTCTTCACTTACAGCACCATTCTCAAAGCATGCGTCGACTCCTCTCGATTCGAT CTAATCGATCCGGTCTACCTGGACATGGAACACCGCCTCATCCCGCCCAATACCGTCACCCATAACATTGTACTCAGCGGATACGGTAGGGCTGGTTTGT ACGACGAGATGGAAAAGTTGTTATCTTCAATGCTGATCAGTCGCACTGCCAAACCAGATTTATGGACCATGAATATCATCATTTCCATCTTCGGCAACAA AGGAGAAATCGAAATCATGGAGAAATGGTACAAGAAGTTTCGAGACTATGGGATCGAACCAGATATTCGGACGTTCAACATCCTGATTGGATCGTATGGG AAGGCGAGGAGCTACGAGAAGATGTCGTCGGTGATGGAGTACATGGGGAAGCTGGGAATCCGGTGGAGTAGCTCCACTTACAACAATGTGATGGAGGCGT TTGGGGATGGAGGGGATTTAAAGAACATGGAGTATATCTTCAACAAGATGGAAAAAGATGGGGTGAAAGCGGATAGTACAACTTACTCTGTTATGATTGA AGCGTACAGGAAGGCAGGGATGAATGATAAGAAACTTTTCAAGAAAATGTGTGATCGGGGGCAAATTCCGGGTGTCGTGACATGCGGCAGTTTGCTAAGT GGCTGGTGCAGAGGAGGTAATATTGACGAGGCGATAGCTCTATTTCAACAAATGGAGAATAGCTGGTTGAAGCCTAATGTTGCGGTCTATAATATTCTAA TTGATGGTATGTGGAAAGCAGGAAGGGTTAAGGAAGCAAGAGACATGTTTTCTAGGCTCTCTAATAATGAGAGTTTACAACCTGATATCCGCACATAG
AA sequence Show only first row Show all	>Lus10027552 pacid=23144582 polypeptide=Lus10027552 locus=Lus10027552.g ID=Lus10027552.BGIv1.0 annot-version=v1.0 MSLSSSLVQTPIGRLSSNCSSFRRRHSLPPPSASPQRQWKQGEFPGTTTKPSVRRRSPLKTVKKKLDRKEKAKAWVNTITEAFSDSVATKQWHTALELFD MLKQQPFYKPKEGTYMKLLVLLGKSGQPDLAHQLFDEMLQQGIPPSPELYTSLLAAYSRSGLIDKAFSILELMKSLPQCQPDVFTYSTILKACVDSSRFD LIDPVYLDMEHRLIPPNTVTHNIVLSGYGRAGLYDEMEKLLSSMLISRTAKPDLWTMNIIISIFGNKGEIEIMEKWYKKFRDYGIEPDIRTFNILIGSYG KARSYEKMSSVMEYMGKLGIRWSSSTYNNVMEAFGDGGDLKNMEYIFNKMEKDGVKADSTTYSVMIEAYRKAGMNDKKLFKKMCDRGQIPGVVTCGSLLS GWCRGGNIDEAIALFQQMENSWLKPNVAVYNILIDGMWKAGRVKEARDMFSRLSNNESLQPDIRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10027552 [exp]	0	1
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	3.5	0.8867
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	4.1	0.8296
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	4.4	0.9000
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	4.7	0.8933
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	7.3	0.8666
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	8.4	0.8698
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	9.2	0.8531
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	13.0	0.8329
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	14.1	0.8294
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	14.7	0.8699

Compare expression of checked genes

Lus10027552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.