Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24030 656 / 0 SLAH3 SLAC1 homologue 3 (.1) AT4G27970 592 / 0 SLAH2 SLAC1 homologue 2 (.1) AT1G12480 449 / 6e-152 SLAC1, RCD3, CDI3, OZS1 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) AT1G62280 229 / 3e-69 SLAH1 SLAC1 homologue 1 (.1) AT1G62262 219 / 2e-65 SLAH4 SLAC1 homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039312 [exp] 1143 / 0 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1) Lus10007023 [exp] 466 / 1e-158 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10006678 [exp] 467 / 3e-158 AT1G12480 734 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10024306 [exp] 223 / 4e-67 AT1G62280 349 / 7e-119 SLAC1 homologue 1 (.1) Lus10015133 [exp] 223 / 2e-66 AT1G62280 387 / 6e-133 SLAC1 homologue 1 (.1) Lus10031545 [exp] 82 / 7e-18 AT1G62280 160 / 3e-48 SLAC1 homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026700 [exp] 408 / 4e-140 AT5G24030 367 / 3e-124 SLAC1 homologue 3 (.1) Potri.015G026801 [exp] 316 / 2e-103 AT5G24030 223 / 4e-68 SLAC1 homologue 3 (.1) Potri.001G114300 [exp] 299 / 6e-96 AT1G12480 432 / 4e-149 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Potri.012G035300 [exp] 224 / 8e-70 AT5G24030 172 / 1e-50 SLAC1 homologue 3 (.1) Potri.010G170050 [exp] 91 / 4e-21 AT1G62280 136 / 7e-39 SLAC1 homologue 1 (.1) Potri.002G227800 [exp] 87 / 2e-18 AT1G62280 120 / 7e-31 SLAC1 homologue 1 (.1) Potri.008G084901 [exp] 69 / 1e-13 AT1G62280 117 / 3e-32 SLAC1 homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03595 [flax] [poplar] SLAC1 Voltage-dependent anion channel
Representative CDS sequence Show only first row Show all	>Lus10027553 pacid=23144530 polypeptide=Lus10027553 locus=Lus10027553.g ID=Lus10027553.BGIv1.0 annot-version=v1.0 ATGGAATTGGCGGAGCAGATTTCGCCAGCAGGGGACGTGCCAGCGCTTCTCAAATATATATCCGCGAACGATGTAGCCGGTTTCGACAATCTCGAATCAC TTGCCCTGGAGACCGACCAGACGCGGAACGGGGGCCACCAGAGGAAGTACTCAATTTCGATCAGCATGCCGAGTTCCCCTGTCGGAGAAGGGTCGAAGAA CACGAAGAAAGTGCTCTTCGACGAAACCCCTGACAAAATCTTAGGTCCTGGGGGGAACCCACAGACAGCGGCTAGTGACGTGTCGGCGACGCAAGCCGTC AAGTTTCATTCTCAGCCGATGCCGAAAAGAGTTGCGGCGGCAGAGCACGGAATCCACGTCAATGGCTTCGCAAACCAACAGTATCATCATCCGGCTATTA GGAAGCTCAAGGATAAGAGGTACGACTCTTTCAAGACGTGGTCGGGAAAGCTTGAGAGGCAGATCTCGCATCTGCGTGGAAAGCCGATAGAAGAGGATGA GTCTTCTTCGCCGGAAGACTCCGCTAGCGGCGGCTCTGCAGGGGAGAAAGCTGATAACAATAACAACAACAACAATAATAATAACAACAAAGATGCCTTG CCAGTTGATCGGTACTTCGATGCACTCGAAGGTCCTGAATTGGAGACTCTCAGGCCGTCGGAGCAAATAGTACTGCCGGACGACAAGACATGGCCGTTCC TCCTCCGTTTCCCAATCTCGTCCTTCGGTATCTGTCTCGGAGTCAGCAGCCAAGCGATCATGTGGAAAGCACTAGCCACTTCAAACTCAACCAAGTTCCT CCACGTCACCCCTGACATCAACCTCATCCTATGGTGCATTTCCCTCGCCTTAGTCTGCATCGTCGCCACAATCTACTCCCTCAAACTCATCTTCTACTTC GAAGCAGTCCGCCGCGAGTACTACCACCCGATTCGAGTCAACTTCTTCTTCGCGCCGTGGATCGCTCTCCTCTTTCTCGTAATGGGCCTCCCGCCTTCAG TGTCCACAACCGTCCACGCTTCCCTCTGGTACGTCCTGATGGCTCCGATCCTCTGCCTCGAGCTTAAAATTTACGGGCAGTGGATGTCGGGCGGGCAGCG TAGGCTGTCGAAAGTGGCGAATCCTTCAAACCATTTGTCTGTAGTGGGGAACTTCGTTGGTGCGTTGTTGGGTGCTTCCATGGGGCTTAAGGAAGGTCCC ATCTTCTTCTTTGCTGTTGGGTTGGCTCATTATACAGTTCTGTTCGTGACGTTGTATCAGAGACTTCCTACCAATGAGACTCTGCCTAAGGAGCTTCACC CTGTTTTTTTCCTGTTCGTTGCTGCTCCTAGCGTTGCTTCCATGGCTTGGGCCAAGATTCAAGGGTCGTTTGATTATGGCTCCAGAATCGCTTACTTCAT TGCTCTGTTTCTCTACTTCTCTCTGGCAGTACGAGTAAACTTCTTTCGAGGATTCAAGTTCTCATTAGCATGGTGGGCGTACACGTTCCCGATGACCGGA GCAGCAATCGCGACCATCCGGTACTCGAATGAGGTGACGAACGTGGTGACACAAGTCCTTGCCGTGACACTCTGCTCGGTTTCGACCCTCATCGTCACTG CCCTCCTTGTCTCCACCATTCTCCACGCGTTCGTGATGAGGGACCTCTTCCCCAACGACATCGCCATTGCCATCAGCGAGAGGAAGCACAAACACCACAG CAGTCACCATCACTTGAAGTGGTTCCATAGGAGGACGGGGAGTTCGGAGGCTAGGGATATCGAGCATTACTTGAAGTTCGTCAACAACTCGGATGGCAAA GATGTGGAGGCGGGTTCGTTGGAGCGTCATGGTTCGGATTCTACTGGCAGTAATGATCTTAAGCCTCAATACTGA
AA sequence Show only first row Show all	>Lus10027553 pacid=23144530 polypeptide=Lus10027553 locus=Lus10027553.g ID=Lus10027553.BGIv1.0 annot-version=v1.0 MELAEQISPAGDVPALLKYISANDVAGFDNLESLALETDQTRNGGHQRKYSISISMPSSPVGEGSKNTKKVLFDETPDKILGPGGNPQTAASDVSATQAV KFHSQPMPKRVAAAEHGIHVNGFANQQYHHPAIRKLKDKRYDSFKTWSGKLERQISHLRGKPIEEDESSSPEDSASGGSAGEKADNNNNNNNNNNNKDAL PVDRYFDALEGPELETLRPSEQIVLPDDKTWPFLLRFPISSFGICLGVSSQAIMWKALATSNSTKFLHVTPDINLILWCISLALVCIVATIYSLKLIFYF EAVRREYYHPIRVNFFFAPWIALLFLVMGLPPSVSTTVHASLWYVLMAPILCLELKIYGQWMSGGQRRLSKVANPSNHLSVVGNFVGALLGASMGLKEGP IFFFAVGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKIQGSFDYGSRIAYFIALFLYFSLAVRVNFFRGFKFSLAWWAYTFPMTG AAIATIRYSNEVTNVVTQVLAVTLCSVSTLIVTALLVSTILHAFVMRDLFPNDIAIAISERKHKHHSSHHHLKWFHRRTGSSEARDIEHYLKFVNNSDGK DVEAGSLERHGSDSTGSNDLKPQY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	0	1
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	1.0	0.9631
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	2.4	0.8910
					Lus10037463 [exp]	4.2	0.8995
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	4.9	0.9160
					Lus10016420 [exp]	6.7	0.8842
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	7.4	0.8940
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	7.5	0.8985
AT2G01800			COP1-interacting protein-relat...		Lus10000702 [exp]	7.7	0.8798
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	9.2	0.8852
					Lus10021242 [exp]	9.8	0.8850

Compare expression of checked genes

Lus10027553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.