Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52900 103 / 2e-25 MAKR6 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039313 [exp] 423 / 1e-149 AT5G52900 107 / 4e-28 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Lus10036407 [exp] 62 / 1e-10 ND 37 / 0.010 Lus10040221 [exp] 46 / 9e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035200 [exp] 153 / 1e-44 AT5G52900 145 / 3e-43 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Potri.015G026600 [exp] 150 / 2e-43 AT5G52900 150 / 4e-45 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Potri.014G091500 [exp] 82 / 4e-18 AT5G52900 72 / 4e-15 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027554 pacid=23144564 polypeptide=Lus10027554 locus=Lus10027554.g ID=Lus10027554.BGIv1.0 annot-version=v1.0 ATGGAAACTTCTTCACAGCAGCAAAGGCCTCTCTCCATCGAGAGCTTCTCCTACAGCTGGTTAGTCAACCTCAAACCAGAAGATACCTTATCCTCCTCGG CCGCCGCCGCCGGTGACAATAATTACGACGATTACGAAGAATCCTCTAATTCTTTCATCGAGATGGACCCACGTATGCCGCCTTCCAAGCGCTTCTTCCA CCACGATTTCAACTTCGACTTCCCCGAACAGTCCCCGCCGATCGCTCTACTTCATGCCGACGAGCTCTTCTCCGACGGCTACCTCGTGCCTTTCTTCCTC ACTTCTGATCCCTCCTCATTTACCAAAAAGTCCGAGGGTAGGATCAGTAATTACGACGATGCCATTTTGTCTTCATCTAATCATCAGGACCATCATGATT ACGACTCAGTATTAGCTAACCATCACCAGCCTGACCCGGCCGCCGGTTGGGGTGGTCAGCCGGTTTCGGGCGGAATGAGGACTCGGAGGTGCTCTTCTCT AAGGAGGTACGGGAAGCTGTCGAAGCGGATGTTGGACAAGTACTTGGATTTCATCAGGCGGAGATTTCACGGCGGTCGAGTTGTCAGCCTGAGGTCAGCC AGTACGAGATCTGAAATGTCGTCCAAAGTCAATGCGGCCGAAGTAATTAATAACAATGGTAAAATAGGCGTGAGGAGATGGAGTTCGTCGGCCGGAGAGG TGTCGCCGAGGATAAGTGTAGCGTACTCGATTGCAGCAAGGAGATCGTCTTGTGACTCTGAGAGCTCTATTTACGAAGCTGTCCTTCATTGTAAAAAATC CATTCATGTTCAATGTGACTGGTCCGCCCATCCTTGTTGGCTAAGCGAAGTTGATGATGATGGATTGACAACCTCCGTTAAGAAGAGTGCCACTAGCTCG GGGATGGGCACGACCGACCGATCGTTCGTTAATTCGCTTGCTCTGGTTATGGGTGTGTTGGTTGCTGATAGAGCGCTCGCCGATCTGGGTTGGGTTGCAG CAGCGATCGGTGGTGGCACTGTTGGTGCGCTCCCTGCTGATGTCGTGAAGGCTGCTTGCAGTGCGACTGAGAGATCGGTAATCGCCGCAGGGGTTGTGGA TATCCAGCGGGTGATTTCGATGGTGGCCCTGTCATGGTGA
AA sequence Show only first row Show all	>Lus10027554 pacid=23144564 polypeptide=Lus10027554 locus=Lus10027554.g ID=Lus10027554.BGIv1.0 annot-version=v1.0 METSSQQQRPLSIESFSYSWLVNLKPEDTLSSSAAAAGDNNYDDYEESSNSFIEMDPRMPPSKRFFHHDFNFDFPEQSPPIALLHADELFSDGYLVPFFL TSDPSSFTKKSEGRISNYDDAILSSSNHQDHHDYDSVLANHHQPDPAAGWGGQPVSGGMRTRRCSSLRRYGKLSKRMLDKYLDFIRRRFHGGRVVSLRSA STRSEMSSKVNAAEVINNNGKIGVRRWSSSAGEVSPRISVAYSIAARRSSCDSESSIYEAVLHCKKSIHVQCDWSAHPCWLSEVDDDGLTTSVKKSATSS GMGTTDRSFVNSLALVMGVLVADRALADLGWVAAAIGGGTVGALPADVVKAACSATERSVIAAGVVDIQRVISMVALSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10027554 [exp]	0	1
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10017794 [exp]	1.4	0.8341
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039313 [exp]	2.4	0.8059
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	6.0	0.8133
AT2G33205			Serinc-domain containing serin...		Lus10011768 [exp]	9.5	0.7242
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	11.4	0.8118
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	12.1	0.8149
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	15.6	0.8204
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	20.6	0.7851
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012181 [exp]	22.3	0.7026
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	22.8	0.7669

Compare expression of checked genes

Lus10027554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.