Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53830 164 / 9e-49 ATPME2 pectin methylesterase 2 (.1) AT3G14310 162 / 1e-47 ATPME3 pectin methylesterase 3 (.1) AT2G47670 62 / 2e-12 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 58 / 6e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G51520 55 / 8e-10 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 54 / 1e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G49180 54 / 5e-09 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G20740 53 / 5e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 52 / 9e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G02300 51 / 4e-08 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039314 [exp] 268 / 8e-89 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10037458 [exp] 168 / 5e-51 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10003933 [exp] 160 / 3e-47 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10013344 [exp] 119 / 4e-32 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10001848 [exp] 66 / 3e-14 AT3G14310 108 / 1e-27 pectin methylesterase 3 (.1) Lus10038915 [exp] 66 / 1e-13 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001466 [exp] 66 / 3e-13 AT4G02300 299 / 1e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 62 / 7e-12 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 61 / 2e-11 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072800 [exp] 160 / 3e-47 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 150 / 1e-43 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 125 / 3e-34 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 78 / 2e-17 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G256700 [exp] 71 / 4e-15 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1) Potri.001G162500 [exp] 69 / 2e-14 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.001G162600 [exp] 69 / 2e-14 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.003G002800 [exp] 67 / 1e-13 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.003G002650 [exp] 67 / 1e-13 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.015G128700 [exp] 63 / 6e-13 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027556 pacid=23144612 polypeptide=Lus10027556 locus=Lus10027556.g ID=Lus10027556.BGIv1.0 annot-version=v1.0 ATGGACGTCATCAAGGCCTCCATTAATGTCACGTGCACCTCCGTCCGGCGTAACATTGCCGCCGTTAACAAAGCGCTGTCCACCAGGAAAGACCTTACCC CAGGCTCCAGGTCAGCACTGAAAGACTGTGCGGAGACAATGAGCACGTCATTAGACGAGCTCCACGTAGCGCTAGCCGAGCTGGACGAATACCCAAACAA GAAATCGATAACCCCACACGCCGAGGATCTAAAGACTTTACTAAGTGCAGCGATGACAAACCAGGAGACATGCCTTGACGGCTTCTCCCATGACGATTCC GAGAAGAAGGTCAGGAAAACGCTGGAGACGGGGCCGGTCCGGGTCGAAAAGATGTGCGGTAATGCGCTGGGGATGATCGTCAACATGACGGAGACGGACA TGGCTACTAACGCCGTAAAAAATTAG
AA sequence Show only first row Show all	>Lus10027556 pacid=23144612 polypeptide=Lus10027556 locus=Lus10027556.g ID=Lus10027556.BGIv1.0 annot-version=v1.0 MDVIKASINVTCTSVRRNIAAVNKALSTRKDLTPGSRSALKDCAETMSTSLDELHVALAELDEYPNKKSITPHAEDLKTLLSAAMTNQETCLDGFSHDDS EKKVRKTLETGPVRVEKMCGNALGMIVNMTETDMATNAVKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53830		ATPME2	pectin methylesterase 2 (.1)		Lus10027556 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	4.5	0.9937
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	6.3	0.9937
					Lus10011962 [exp]	7.7	0.9937
					Lus10028673 [exp]	7.9	0.8821
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	8.9	0.9937
					Lus10022805 [exp]	10.0	0.9937
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10027248 [exp]	10.1	0.8722
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	11.0	0.9937
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	11.8	0.8642
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	11.8	0.9937

Compare expression of checked genes

Lus10027556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.