Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 295 / 3e-101 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039317 [exp] 388 / 2e-139 AT5G24090 300 / 2e-103 chitinase A (.1) Lus10040419 [exp] 259 / 3e-87 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10009215 [exp] 251 / 4e-84 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10023535 [exp] 249 / 5e-83 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10023534 [exp] 248 / 1e-82 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10009216 [exp] 243 / 1e-80 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10037985 [exp] 242 / 3e-80 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10040420 [exp] 241 / 3e-80 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10010137 [exp] 237 / 2e-78 AT5G24090 330 / 1e-113 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024200 [exp] 314 / 6e-109 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.014G091700 [exp] 275 / 2e-93 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.012G033932 [exp] 273 / 2e-92 AT5G24090 397 / 7e-140 chitinase A (.1) Potri.002G165700 [exp] 271 / 8e-92 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.002G242000 [exp] 270 / 3e-91 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.014G091600 [exp] 262 / 3e-88 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.012G033866 [exp] 258 / 8e-87 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.015G024100 [exp] 254 / 2e-85 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024000 [exp] 254 / 3e-85 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024150 [exp] 250 / 1e-83 AT5G24090 329 / 3e-113 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10027560 pacid=23144591 polypeptide=Lus10027560 locus=Lus10027560.g ID=Lus10027560.BGIv1.0 annot-version=v1.0 ATGTGCCTCCAGAAAATATGCCTACATAAACATAGCCTTCCTCAACAAGTTTGGCAATGGCCAAACCCCGGCATGGGCAGCTACTCGTTATCATCCCAAG CAGATGCCAGAAATGTGGCTGAGTACCTGTGGAACAACTTCCTGGGTGGGCAGTCCTCGTCACGTCCTCTAGGGGATGCTGTGCTGGATGGGATCGACTT TGACATCGAGCAATCGACTCAGCACTGGGAAGATCTTGCGCGGTACTTGTCAGCGTACAGCAGTCGTGGTAGGAAGGTGTATCTAGCAGCAGCTCCTCAG TGTCCTTTCCCGGACAGAAGCCTAGGAGCTGCTGTAAATACAGGTCTGTTTGACTATGTGTGGATCCAGTTCTATAACAACCCTCCTTGCCAGTACACTT CAGGAGATGTCAAAAGACTGTTGAGTTCGTGGAATCAATGGACGACATCGATTAACGCAGGGAAGATATTTCTCGGGTTGCCTGCTGCTACTCAGGCAGC TGGAAGTGGGTATATTCCTCCAGATGTGCTGACATCTCAAATTCTTCCACAGATAAGGAATTCCCCCAAGTATGGAGGTGTTATGCTTTGGTCTAGGTAT TGGGATCTTCAGAATGGATATACTTCATCCATTCAGCAAAGTGTATGA
AA sequence Show only first row Show all	>Lus10027560 pacid=23144591 polypeptide=Lus10027560 locus=Lus10027560.g ID=Lus10027560.BGIv1.0 annot-version=v1.0 MCLQKICLHKHSLPQQVWQWPNPGMGSYSLSSQADARNVAEYLWNNFLGGQSSSRPLGDAVLDGIDFDIEQSTQHWEDLARYLSAYSSRGRKVYLAAAPQ CPFPDRSLGAAVNTGLFDYVWIQFYNNPPCQYTSGDVKRLLSSWNQWTTSINAGKIFLGLPAATQAAGSGYIPPDVLTSQILPQIRNSPKYGGVMLWSRY WDLQNGYTSSIQQSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10027560 [exp]	0	1
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	8.2	0.8615
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	11.9	0.9077
					Lus10038520 [exp]	15.0	0.9057
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	21.8	0.8896
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	22.8	0.8937
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	23.2	0.8879
AT2G18420			Gibberellin-regulated family p...		Lus10021098 [exp]	28.1	0.8820
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	31.2	0.8612
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	32.7	0.8923
AT3G19615			unknown protein		Lus10042265 [exp]	35.0	0.8865

Compare expression of checked genes

Lus10027560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.