Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49142 205 / 1e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 130 / 4e-35 MEF22 mitochondrial editing factor 22 (.1) AT4G25270 124 / 1e-33 OTP70 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 124 / 5e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 124 / 7e-33 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18520 121 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 120 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G04840 119 / 2e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16470 118 / 2e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G05240 118 / 5e-31 MEF19 mitochondrial editing factor 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039703 [exp] 133 / 2e-36 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 128 / 1e-34 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031714 [exp] 123 / 1e-32 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 122 / 2e-32 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 122 / 4e-32 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10024876 [exp] 122 / 4e-32 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10029436 [exp] 120 / 9e-32 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026460 [exp] 120 / 1e-31 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 119 / 3e-31 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G005700 [exp] 236 / 2e-74 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 127 / 3e-34 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 126 / 7e-34 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 125 / 2e-33 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 120 / 1e-31 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.003G058700 [exp] 117 / 1e-30 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G006800 [exp] 117 / 1e-30 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G018800 [exp] 117 / 1e-30 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 117 / 1e-30 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G041501 [exp] 112 / 2e-30 AT2G34400 251 / 1e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027562 pacid=23144569 polypeptide=Lus10027562 locus=Lus10027562.g ID=Lus10027562.BGIv1.0 annot-version=v1.0 ATGGACGGAAATTACCGCTCAAACCCTTCCTTAGGGATCAAACTGATGAGGGCTTACGCAGCCTCTGGTCACGCCAGAGATGCACGCCGCATATTCGACG GAATTACTGAGAAGAATGTCGTTTTCTTCAATGTCATGATTCGGAGCTACGTTAACAACCACTTCCATCGTGATGCGTTGGCTTTGTACAAAAACATATT GAGTTCTGAAATCGTTCCTGATCATTACACGTTTCCTTGTGTTCTAAAGGCATGCTCTGGATCCGATAATCTGTGTCTCGGTGTCCAGATTCACGGTTGC GTTATGAAAAATGGGCTCGACTCGAATCGGTACATAGTTAATTGCCTGGTTGCAATGTACGGGAAATGCAACCGTTTAAAGGAAGCTCGCCTGGTGCTCG ATGAAATGCCTAGTAGAGATGTGGTTACGTGGAGTTCTTTGATTGCCGGGTGTGCTCAGAACGGACGTTTCGATGAGGCACTGGATTGTTGCAGAGAGAT GGAGAGTTTGAAGCTTAAACCGGATTCGTCCACGATTCTCCCACAATGGCTAGCCCCCCACCGGCTGTGA
AA sequence Show only first row Show all	>Lus10027562 pacid=23144569 polypeptide=Lus10027562 locus=Lus10027562.g ID=Lus10027562.BGIv1.0 annot-version=v1.0 MDGNYRSNPSLGIKLMRAYAASGHARDARRIFDGITEKNVVFFNVMIRSYVNNHFHRDALALYKNILSSEIVPDHYTFPCVLKACSGSDNLCLGVQIHGC VMKNGLDSNRYIVNCLVAMYGKCNRLKEARLVLDEMPSRDVVTWSSLIAGCAQNGRFDEALDCCREMESLKLKPDSSTILPQWLAPHRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10027562 [exp]	0	1
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10042689 [exp]	2.0	0.7071
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	6.3	0.7683
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	13.1	0.7360
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	18.9	0.7240
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	19.0	0.7020
AT5G23200			unknown protein		Lus10017393 [exp]	27.9	0.6668
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	31.2	0.6980
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	32.6	0.6764
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	34.1	0.6350
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	37.2	0.6754

Compare expression of checked genes

Lus10027562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.