Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039318 [exp] 91 / 3e-21 AT5G52950 268 / 4e-79 unknown protein Lus10021770 [exp] 53 / 7e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027563 pacid=23144458 polypeptide=Lus10027563 locus=Lus10027563.g ID=Lus10027563.BGIv1.0 annot-version=v1.0 ATGGAGGCCAACGAATTACCAGATGAGTCGCTCAGGCAACCTGAAGCAGCAACTGTAACGAGTAAGATCATTGAGCCGAAAGCCCAAGGAGTTTCAGATG ACGATATCAACTTTGACTGTCGATCTCAAACATTGGGGACAAAAGAGCGCCGTGGGGGAGTTCACATGGTGGGCTACGATGTTACTCCTTCTCAGTTGAG TAAGTCGTCTACTCGGAGTCAGCAAACTTCTCGAGCTTCTGAACCTTCTATCTGCTCAGCTGCTCCTCCGACCACTGTGTCTCAGGCCGTCTATGAGCAG CTTTGTGAAGAAATAACATCAGAGTTGCTGGCCATGTTCGATCGCAAGGTACGAGAGTTTCATGCTCAGATACAGGCTCAAATCTCCAAGACGATGATGC CACCTCAGACACATGTGCCATCAGATCAGTCTGCATCTGCAATTGGAGCAGCCAACGATGATATTCGAAATGATGGCGAGGAGCAACAGAAAAGATTAGC TCTATCACAGATTGTGATGACGGATGACTGA
AA sequence Show only first row Show all	>Lus10027563 pacid=23144458 polypeptide=Lus10027563 locus=Lus10027563.g ID=Lus10027563.BGIv1.0 annot-version=v1.0 MEANELPDESLRQPEAATVTSKIIEPKAQGVSDDDINFDCRSQTLGTKERRGGVHMVGYDVTPSQLSKSSTRSQQTSRASEPSICSAAPPTTVSQAVYEQ LCEEITSELLAMFDRKVREFHAQIQAQISKTMMPPQTHVPSDQSASAIGAANDDIRNDGEEQQKRLALSQIVMTDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027563 [exp]	0	1
AT3G52460			hydroxyproline-rich glycoprote...		Lus10004193 [exp]	17.5	0.8344
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	23.7	0.8217
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10004227 [exp]	25.9	0.8310
AT3G53630			unknown protein		Lus10025312 [exp]	27.2	0.8393
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10013211 [exp]	28.4	0.7644
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10041437 [exp]	33.5	0.7692
					Lus10023665 [exp]	41.6	0.8269
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	46.9	0.8244
AT5G38900			Thioredoxin superfamily protei...		Lus10005082 [exp]	51.0	0.8174
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	57.5	0.7688

Compare expression of checked genes

Lus10027563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.