Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52950 419 / 9e-131 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039318 [exp] 699 / 0 AT5G52950 268 / 4e-79 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033800 [exp] 680 / 0 AT5G52950 546 / 3e-179 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027565 pacid=23144481 polypeptide=Lus10027565 locus=Lus10027565.g ID=Lus10027565.BGIv1.0 annot-version=v1.0 ATGGTCCAGAAATTCTTACCCGAGAAAATCTACGCCGGCAATCACTCCACTGTGAAACGCCCCTCATCAATGGAGCAAACCCTCGACTCAATCACAGATT ACACCAAAACCCAACGCGTAGTCCTCCTCCTCGACCTAAATCCACTTCTCCTTCATTCCCCCTCTTCCTCCACCTCCTACATCTCATATCTCCTCGCCGC CATTAAACCACTCGTCACCTTCCCGCCACTCTCTTCCTCCTCTCTATTCTCCTTCAAGCTTTTCTTCTCTTCCCTCTCCCCTCTCCTCTCCTCCTCAAAG CTCCCTTTCCCATCTCCCTCTCCTCTCTCCTTCGACCTCCCCGCCGCCACTTTCCACTCCCTCTCCCAAATCCTCCTCCACCCTTCCTTCCTCCCGTCGA TCTGTCCCCATGGCGCCGCCTCCTCCTTATCAAAGGCTTCCCACCTTGCTGCGTCGATGCGGCAGCTCGTTCATGACTACGTCTGGGAATTGGATCTTAA TTCCACCTCAATCGACGGTAATTTTGAAATTAGGTCTAATTTGGTTCTTATGTTTTCTCCCCTGGTAACGGAATCGAACGGAATTTCTGAGTTTTTTGGT GTTGGTTTGGATGATGGATGCTTGAGAGATGTGAATGAGTTCACTCGGAAGTTCCGTGGCTACTTTGCGGGTGTGAATGATGCGTTTGTAAGTAGAGATA TTCATTTGGGTTGGATTAATGTGAAATGTGAGGAATTGTATAGTAGTTCTGGAGTTGATGAATTGTCTCGATTTTGGGAGAGTGGGATTAGGGAATTAGG TTGGGGGTTTTGTTCAAGTGATATTCTTGTGTTGGGTTCTGCTGTGGTTCCGTTTGTGTTGATCTATCCGAGAATTGGACTTCCACCGAATGCAGCCATT GATCTTCCCACCTCTAAGACGATTCTAGCGAGGTTGAGTCTCGAGATAGTAGACGTGAATGGGAATCCTTTGGAATGCAAGTATTGTGACCTTGAACTTG CAGGTTCAAGGTCAGCATTCATGGATGCAGAATTGGCTAGATGCAAAGGGAATAGATCAATACACGAAGTGTTTGGCAAAGGAAATGCTAAGCTACACGT TAAGGCAGTGCAAATGTCCGATAAGGATGCCAAATTCTCAACGTACTTACCTGATCCGATTTTAGTATCCGAGCATCTCGAGAAAGGAGGGAATGGAAGT AGTAGAGAGGACGAGTTGTTTGAGGAGAAGGTTCTTCAAATGCTGGAGCCAGAAATGTTTCAATCCATGCTAAAGAAGTCCGGACCGATTTGGAAAATTC TTTTGAGTTTCCTATGTCGAGAGGGGTATTGGGGTTTGGTTACTCTTTCTGATGGCAATGGCTGTTCACTTACTGGAATACTCAAGCCTTTCACGGTATC TTCAGCTCTCATGTGGATAAAATCGGACGAATTCAAGCCTAATATTGGCAGACCTTCAGTTCAAGTTGTTACAAAGATGGGAGATGGAATGGTCAAACGC AAGGTTGATTCTGATGTTTCACATATTGGCTCTAGTTCTGGACCTCTACCGCCCGGCAAACCTTCTGAAATTAGAGGCTGTTGTGAAGACAGGAAGAACA AGAAGAAGAGGAAGAGTTTGAGTAAGCTTCAGGAACTTACTTGGTCTGACTTCTGTAAGGCGGCAATTGAACACTTGCAGATAGATTTGGAAGATATTTT CTTTGTAAGGGCACACAACAAGTCTAAGAAGTTGAAGTTTCTCAAATGCTGGATGAAAGAAGCCAAGAAGTCCACTTACCAAAGTGTCCCCATTACAGAC AGTGACAAATTAGACTGTGACGTCTCGAAATCAGAGGAAATATTGAATGATTTACCTCATGAAGGTGCACAAGCGATTGCATCGTGTGCTTCAGCAGCAG AGGATGCATTGACTGGAACTTCTAGAGTGCAGGATGAAGTTGCTGTTGATTACGACTCTCAAACTTTGGAAACCTTCCTTGATGATCTTCCTCAGAAAGT TCAACAGGGACTTGAATGTGACGATGTGGACCTTGGTTCTCTGGCTGAGCGACTTGTTAACTCGTCTGTGTTTTGGTTGTTTAAGAAATGCGAAAATGAA ACCAATGTGGAGGAGGATCAAACTCGAGAGGTGAAATCCGAGGATGGTTCCACGAGTAAAGTTGCTACTGAACTAATGACCCTTTTACTTAGGGAGCCTA AGGACTTGGCTGCTAAGGCGTCCAATCCAAGTTCTTCTGAGATCACCTCAGAAAGAATAGTTAGAGAATATGAGCTACAGATTTTATTCCGGATGGAGAT GCTGCAATCAGAGATTGGAGCTAGTATCAAGGAGTCCTTGAAACAGAAGTTTGTGAAGCAAATTTGCTCCTGTTTAGAGAGCATCCAGTGTCGTCTGAAT GGAGGATTCTTCGGTGATTGGAGTCTTGATAGATATGTAGAGAAGATCTTAAAAGCCAGGTATTGTAAGAGTCTTGAAGATGTTGTCCACAGAATCTATG AAAGACTCGATCTTTTGCTGTTCGAAGACGAGGATGAACCCTCCAACCCATTGTTCAGTAGTGAGGATGGGAATCAAACAGATGAGAGGAAAGGCAATGG AAGGATCAACAATGCAGAACATAGCTCCTCTTCATGGGTGGTAGACAGTGAATCTCAAGGCGACTCCCAGGAGCTTAAACATGATGATGATGATGATCAT GCTCGAAGATTGATCGAAGCTCAAGAGAGGAGACAGAGGGCTCGGAGGTTCGCTTCCTTTAGGGTTCCGGACCTGCACAAAGTCTGGGTACCAAACCAGG TGAAACTGATGAAAGTAAAGCATGACAATCATCATGTCCGAAGACAATCGAAACGAGAAGAACGTAGGAGAGGAAAGTATGATGTGGTATGTGAGACTCC CATGACAGAGAAGGATAGATCAGAATGCAGCAGTAGTACTAGTGGGAAGAGGAATAAAGCTGGTGCTGCAAAATCTCCTGTTTGTGGTTCTGTCTCCAAG GCACTGTTCCAAGATTGCTGA
AA sequence Show only first row Show all	>Lus10027565 pacid=23144481 polypeptide=Lus10027565 locus=Lus10027565.g ID=Lus10027565.BGIv1.0 annot-version=v1.0 MVQKFLPEKIYAGNHSTVKRPSSMEQTLDSITDYTKTQRVVLLLDLNPLLLHSPSSSTSYISYLLAAIKPLVTFPPLSSSSLFSFKLFFSSLSPLLSSSK LPFPSPSPLSFDLPAATFHSLSQILLHPSFLPSICPHGAASSLSKASHLAASMRQLVHDYVWELDLNSTSIDGNFEIRSNLVLMFSPLVTESNGISEFFG VGLDDGCLRDVNEFTRKFRGYFAGVNDAFVSRDIHLGWINVKCEELYSSSGVDELSRFWESGIRELGWGFCSSDILVLGSAVVPFVLIYPRIGLPPNAAI DLPTSKTILARLSLEIVDVNGNPLECKYCDLELAGSRSAFMDAELARCKGNRSIHEVFGKGNAKLHVKAVQMSDKDAKFSTYLPDPILVSEHLEKGGNGS SREDELFEEKVLQMLEPEMFQSMLKKSGPIWKILLSFLCREGYWGLVTLSDGNGCSLTGILKPFTVSSALMWIKSDEFKPNIGRPSVQVVTKMGDGMVKR KVDSDVSHIGSSSGPLPPGKPSEIRGCCEDRKNKKKRKSLSKLQELTWSDFCKAAIEHLQIDLEDIFFVRAHNKSKKLKFLKCWMKEAKKSTYQSVPITD SDKLDCDVSKSEEILNDLPHEGAQAIASCASAAEDALTGTSRVQDEVAVDYDSQTLETFLDDLPQKVQQGLECDDVDLGSLAERLVNSSVFWLFKKCENE TNVEEDQTREVKSEDGSTSKVATELMTLLLREPKDLAAKASNPSSSEITSERIVREYELQILFRMEMLQSEIGASIKESLKQKFVKQICSCLESIQCRLN GGFFGDWSLDRYVEKILKARYCKSLEDVVHRIYERLDLLLFEDEDEPSNPLFSSEDGNQTDERKGNGRINNAEHSSSSWVVDSESQGDSQELKHDDDDDH ARRLIEAQERRQRARRFASFRVPDLHKVWVPNQVKLMKVKHDNHHVRRQSKREERRRGKYDVVCETPMTEKDRSECSSSTSGKRNKAGAAKSPVCGSVSK ALFQDC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52950			unknown protein		Lus10027565 [exp]	0	1
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10024522 [exp]	1.0	0.9024
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	2.4	0.8761
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	2.8	0.8761
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	3.2	0.8662
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	6.3	0.8335
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	6.9	0.8559
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	7.2	0.8804
AT2G03667			Asparagine synthase family pro...		Lus10026669 [exp]	8.2	0.7739
AT1G29630			5'-3' exonuclease family prote...		Lus10004608 [exp]	8.8	0.7692
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	11.3	0.8229

Compare expression of checked genes

Lus10027565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.