Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23740 634 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 566 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 534 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 526 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 511 / 1e-174 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 502 / 3e-171 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 468 / 4e-158 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 427 / 9e-142 RKL1 receptor-like kinase 1 (.1) AT3G17840 419 / 7e-139 RLK902 receptor-like kinase 902 (.1) AT1G68400 398 / 2e-130 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039321 [exp] 1148 / 0 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014943 [exp] 775 / 0 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 770 / 0 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 666 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 661 / 0 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 552 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 551 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 549 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 547 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023500 [exp] 754 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 751 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 699 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 694 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 551 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 548 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 544 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 522 / 6e-179 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 521 / 6e-178 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.004G086100 [exp] 430 / 2e-143 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10027568 pacid=23144597 polypeptide=Lus10027568 locus=Lus10027568.g ID=Lus10027568.BGIv1.0 annot-version=v1.0 ATGGAAATCATCAAGCTATCATTTGTTTTTGCTGCAATCATAGCTGTTTCATTTCCCATCATCACCACTTCCGAGCCATTCGAAGACAAAGAAGCATTAC TGGATTTCATCAGGAATGTTCAGTTGGCCTACTCTCCTAACTGGGACGAGAGCCTTCCATTATGCTTCTTCTGGACAGGAGTGACTTGCAACAGCGAAAA CTCTCGAGTCATAGCTCTCCATCTCCCCGGAATGGGAATTCGGGGATCGATTCCTTCCAACACTCTGAGCAGACTCTCAGCCATTCAGATACTCAGTCTG AGATCTAACGGCATATCAGGCGCTTTCCCTTCTGATTTCACCAAGCTGAAGAACTTGACAGCTCTTTACCTTGAATACAACAACTTCACTGGGCCATTGC CTTCTGACTTTACAGTATGGAGCAATCTCACTGTTCTTGATCTTTCAGGAAATGGATTTAACGGCAGTATTCCGAATTCTATATCGAACTTGCAGCATCT CACAGCACTGAATCTTTCCAACAATCATCTTACAGGGACTGTTCCTCGGTCCTTGTTAAGGTATCCAAGTTCAGCATTTTCCGGAAACGATTTAGAGATC GTTACTGTTACCGCCTTACCTCCAGCTATCCCAGTTCAACCACCGAATCCTCATCCTCAGCCTTTTACGACGAAATCCAGTGGGAAACTAAGCGAGCCAG CAATATTAGGGATCGTTTTAGGCAGCTGTGTGGTGGGATTTGTGACTATTGCTCTTATGATGATATGCTGCTACTCGAAGAAAGGCAAGAAGAAGAAGGA TGGATTGCCAGTCAAGTCGCAGAAGAAAGAAGAGTACTCCTTAAAGATGAAAGCTTTAGAAAAGGGTAACAATAACAGACTTGAGTTCTTTGAAGGTTGC AGTCTTGCATTTGACTTGGAAGACTTGTTGAGAGCATCGGCAGAAGTGCTTGGGAAGGGAACTTACGGGACGACTTACAAGGCTGCACTCGAGGATTTGA ACACTGTGGTTGTAAAGAGATTGAAAGAAGTTACAGTTACGAGAAAGGATTTCGAGCAGCAGATGGTTGTGGTTGGGAACATTAGGCATGAGAATGTGTC TCCATTAAGAGCATATTACTACTCAAAGGATGAGAAGCTCATGGTTTACGATTTCTACGACAATGGGAGCATGTCCACAATGTTACATGGTGGAAGAGGG GAAGACAGGACCCCATTAGACTGGGAAACTAGAGTGAGAATTGCAGTAGGTGCAGCAAGGGGAATTGCTTACATCCACACCCAACAAACTGGAAAACTTG TTCATGGGAACATAAAATCCTCAAACATCTTCCTAAACTCTGACGGGTACGGTTGCATTTCTGACGTTGGGTTAGCTACACTGATGAGTTCATTGCCTGC ACCAGTCTCAAGAAGAGCTGCAGGTTATACTGCCCCAGAGATAAAAGACCCGAGGAAGTCAACCCCTGCATCAGATGTGTACAGTTTCGGGGTGCTACTG CTAGAACTACTCACGGGGAAATCTCCAACGCACGCTACCACTGGGAGCAGCGAAGAGGTTGTTCATCTGGTGAGATGGGTGAATTCGGTGGTGAGAGAAG AATGGACCGGTGAAGTGTTTGATGTGGAACTTCTGAGGTATCCTAACATTGAGGAGGAAATGGTGGAGATGCTGCAGATAGGGATGAACTGTGTGGTGAG AACACCGGACAAGAGACCAAAGATGGCTGAAGTTGTGAAAATGGTGGAAGGGATCCGACGAGTGACCGTTGGAAGCCAGACATTCTCATCGCCGGATGCT GGTGTCGAAATGGGTATGTCAACAACCCCAACGCCTCTAGCGTTTGGGGAAGGTACCTCTTCAGGGATACAGTGA
AA sequence Show only first row Show all	>Lus10027568 pacid=23144597 polypeptide=Lus10027568 locus=Lus10027568.g ID=Lus10027568.BGIv1.0 annot-version=v1.0 MEIIKLSFVFAAIIAVSFPIITTSEPFEDKEALLDFIRNVQLAYSPNWDESLPLCFFWTGVTCNSENSRVIALHLPGMGIRGSIPSNTLSRLSAIQILSL RSNGISGAFPSDFTKLKNLTALYLEYNNFTGPLPSDFTVWSNLTVLDLSGNGFNGSIPNSISNLQHLTALNLSNNHLTGTVPRSLLRYPSSAFSGNDLEI VTVTALPPAIPVQPPNPHPQPFTTKSSGKLSEPAILGIVLGSCVVGFVTIALMMICCYSKKGKKKKDGLPVKSQKKEEYSLKMKALEKGNNNRLEFFEGC SLAFDLEDLLRASAEVLGKGTYGTTYKAALEDLNTVVVKRLKEVTVTRKDFEQQMVVVGNIRHENVSPLRAYYYSKDEKLMVYDFYDNGSMSTMLHGGRG EDRTPLDWETRVRIAVGAARGIAYIHTQQTGKLVHGNIKSSNIFLNSDGYGCISDVGLATLMSSLPAPVSRRAAGYTAPEIKDPRKSTPASDVYSFGVLL LELLTGKSPTHATTGSSEEVVHLVRWVNSVVREEWTGEVFDVELLRYPNIEEEMVEMLQIGMNCVVRTPDKRPKMAEVVKMVEGIRRVTVGSQTFSSPDA GVEMGMSTTPTPLAFGEGTSSGIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23740			Leucine-rich repeat protein ki...		Lus10027568 [exp]	0	1
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	3.2	0.9610
AT4G34800			SAUR-like auxin-responsive pro...		Lus10007563 [exp]	3.5	0.9509
AT4G33590			unknown protein		Lus10041131 [exp]	5.8	0.9530
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	6.9	0.9489
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	8.8	0.9527
AT3G19430			late embryogenesis abundant pr...		Lus10021837 [exp]	9.5	0.9495
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	11.8	0.9329
AT3G24750			unknown protein		Lus10038162 [exp]	12.2	0.9502
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	17.3	0.9386
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10002401 [exp]	17.9	0.8941

Compare expression of checked genes

Lus10027568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.