Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53310 241 / 4e-80 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039322 [exp] 399 / 5e-142 AT5G53310 247 / 2e-83 myosin heavy chain-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033100 [exp] 308 / 4e-106 AT5G53310 259 / 2e-88 myosin heavy chain-related (.1) Potri.015G023400 [exp] 303 / 4e-104 AT5G53310 248 / 4e-84 myosin heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF06017 [flax] [poplar] Myosin_TH1 Unconventional myosin tail, actin- and lipid-binding
Representative CDS sequence Show only first row Show all	>Lus10027569 pacid=23144490 polypeptide=Lus10027569 locus=Lus10027569.g ID=Lus10027569.BGIv1.0 annot-version=v1.0 ATGAGCAGATCCAACCGTCGAGTCCAAATCGACGATTCCGACGCCCCTAGATACGACCAGAACGGCGCCGCTGGAATCGAGGAGGAGGAAGGGAGTGGGA CGAAGCTTAGATCGTCGAGTAGCAACGTCAGCGACGATCAGGAGCCGTTCATGGGGGTCAAGGTTCGTCGGAAGGCTTCGCTCCATAGGGATGTCAAAGG GGATTACATCGACGTGCCTTCGCATCCTCGCCTCATGAAGATCTTGCATAAACAAGGTGACAAGCAAATATTGTTTGCAGATAAAGTGTTGAAATTCACA GCTTCAGGGAAGATGAAGCGGCGGATACTGTTGATGACTGACTTCGCCATTTACATGATTGACCCGGAAACTGATGCACTTAAGCGGAGGATAGCAATTG CAGCAGTAGAGAAGCTCTGTTTAAGTGAGCTAAGTGATAACTTTTTTGCAATCGTCATCCCGACGGAGTATGATCTACTTATTGCCAGTACCAGAAAGAC AGAAGTCGTTACGGTACTAGTTGAACATACCAAGAGTGCTTCGAACTATGAGCTTGATGTGGAGTTCTCTAACAGCTTCGAGTATCAGGCCGCTGCAGAT GTGGTGAAGGAAGTTCGGTTCGAGGAAGTCGAGGCAGATGCTTATAATCTTCTGGTTGAGGAAATGGCGTTACCTGGAAGAAGTATTCAGGCCTGTTTTG GAGCCCCATTCTATCAGTTTGAATGGCGGCTTGGAGGGAGCGATCTGGCGCCGGAATCACTTCTCCCGCCAAAAAAGTCCGAGAAGTTCGAGATCGGAGG GAAACTTATATGTGAGTTACGAAAAGCTACTGATAATGATATTCCATCCGCCGCCGGCGATGGCGTCAGCATCGTAGTCTCGCCATTTCCTGACATTCCA ATCAGCTGA
AA sequence Show only first row Show all	>Lus10027569 pacid=23144490 polypeptide=Lus10027569 locus=Lus10027569.g ID=Lus10027569.BGIv1.0 annot-version=v1.0 MSRSNRRVQIDDSDAPRYDQNGAAGIEEEEGSGTKLRSSSSNVSDDQEPFMGVKVRRKASLHRDVKGDYIDVPSHPRLMKILHKQGDKQILFADKVLKFT ASGKMKRRILLMTDFAIYMIDPETDALKRRIAIAAVEKLCLSELSDNFFAIVIPTEYDLLIASTRKTEVVTVLVEHTKSASNYELDVEFSNSFEYQAAAD VVKEVRFEEVEADAYNLLVEEMALPGRSIQACFGAPFYQFEWRLGGSDLAPESLLPPKKSEKFEIGGKLICELRKATDNDIPSAAGDGVSIVVSPFPDIP IS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53310			myosin heavy chain-related (.1...		Lus10027569 [exp]	0	1
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	1.0	0.8634
AT2G39805			Integral membrane Yip1 family ...		Lus10001020 [exp]	3.7	0.7344
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	4.0	0.7839
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10018455 [exp]	4.2	0.7801
AT4G23720			Protein of unknown function (D...		Lus10028743 [exp]	9.8	0.7584
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	11.5	0.7650
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	17.0	0.7540
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	18.3	0.7731
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	21.2	0.7405
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	24.7	0.7371

Compare expression of checked genes

Lus10027569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.