Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009618 [exp] 39 / 0.0008 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027571 pacid=23144492 polypeptide=Lus10027571 locus=Lus10027571.g ID=Lus10027571.BGIv1.0 annot-version=v1.0 ATGCAGCGAACGAGGTGTGGGTGCTGCAACAGTTGGGTGTCCGAGAGACTTGGTGCAAAACTGTTTACTATCAGCGGCGGAATGAGTTGTTGGGAGCTAC TAGGGCTGTCGAAACATGGCAAAGTGATATGTAGTGATGATGACCGGAAAAAGTTGCGTGTACTCGATGTCACAGGCCAAACATCTACTCCACCATTGAA TGCCAAATATCGTAGAGACGTACTTAGGGCACAACTGGCAACCTATGTTCCTTCGAAGAAGTCATTATCGCCCGGACAGTATTTTCATGGACACATGAAC ATTTATGAAAAACATCCAGTTGAACAAACTGTCAAACTGTCTGCTTTGGCCGAGTGGTCAAAGCGTGTGCCTGCTATAAGTACATGGGGTTTCCCACCAG AGTTTGAAAACCAACAGACAACCGTCAAGAGTTCGAGAACCAACAGACAACCTTCAGAGTTCGAAGACCAACAGTTTGTCCGATCTCCCAAAATGTGA
AA sequence Show only first row Show all	>Lus10027571 pacid=23144492 polypeptide=Lus10027571 locus=Lus10027571.g ID=Lus10027571.BGIv1.0 annot-version=v1.0 MQRTRCGCCNSWVSERLGAKLFTISGGMSCWELLGLSKHGKVICSDDDRKKLRVLDVTGQTSTPPLNAKYRRDVLRAQLATYVPSKKSLSPGQYFHGHMN IYEKHPVEQTVKLSALAEWSKRVPAISTWGFPPEFENQQTTVKSSRTNRQPSEFEDQQFVRSPKM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027571 [exp]	0	1
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10035645 [exp]	7.9	0.7450
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	10.4	0.7744
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10013541 [exp]	19.6	0.7508
AT5G17680			disease resistance protein (TI...		Lus10005174 [exp]	31.6	0.7338
AT1G29270			unknown protein		Lus10007304 [exp]	32.4	0.7359
					Lus10035529 [exp]	32.5	0.7383
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	41.2	0.7025
AT5G53500			Transducin/WD40 repeat-like su...		Lus10012846 [exp]	44.3	0.7311
AT3G52040			unknown protein		Lus10005332 [exp]	49.8	0.6867
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	53.9	0.7311

Compare expression of checked genes

Lus10027571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.