Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53280 224 / 2e-72 PDV1 plastid division1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039325 [exp] 387 / 2e-136 AT5G53280 268 / 1e-89 plastid division1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022900 [exp] 272 / 2e-91 AT5G53280 259 / 2e-86 plastid division1 (.1) Potri.012G032200 [exp] 265 / 1e-88 AT5G53280 290 / 3e-98 plastid division1 (.1) Potri.009G111000 [exp] 58 / 2e-09 AT2G16070 229 / 8e-74 plastid division2 (.1.2) Potri.002G167500 [exp] 43 / 0.0001 ND / Potri.014G094600 [exp] 41 / 0.0004 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027574 pacid=23144441 polypeptide=Lus10027574 locus=Lus10027574.g ID=Lus10027574.BGIv1.0 annot-version=v1.0 ATGAGAGGGGAGATGGAGGTCGAAGAAATCGAAGCTGTCCTCGAGAAGATTTGGGATCTCCACGACAAGCTCAGCGACGCCATCCACACCATCTCCCGAG CTCACTTCCTCAACTCCATCAAGAACCTCCGCAGGCCGTCCCCCGATAAGAAGCACCACCACCAGCACCACCACCTCTTCGGCGGCGACGACAACCGCGG AGTATTCGGCGGCGGAGGCGGATACGTCTTCGTCAAGGAGTTCCGAGTCGACGATAACGAGTCCGCAATTCGTGAGGCTAAGAGCTTGAATGCTATAAGG ACGGCGCTCGAGAACCTCGGCGAACAGCTGGAGTTCTTCCATACTGTACAGTTGCAGCAACGAGCTGAGAGAGATGCAGCGATTGCGCGATTAGAACAAA GCAGGATTGTTCTATCGCTGCGATTGGCTGAACATCACGGCAAGAAGTACAATGTCATCGAAGAAGCTCTAGCATTCATCGGGGATGTACAAGATCCAAA TCGATTCGTCTCCCCAAACAACCTGCACACCTACCCTCCAAGTCCCACAGGAGAGAACCCTGCCAAGCTACAAAGAAAGTCTTCAAATGTAGTGGTAAAT GTTCTCATTTCCAGTTTCGATTTTGCCAAGAGATCCCTTAAACTGGACCATGTAGGTGGGGTGCTAGGGAATGTGGCTCTGTTTACTGTGAGCATGCTTG CATTGCTTCACCTGCAGCAAGTAGATTCTTCCAAAGATCTTTCATATAAACAAGAGCATTCTGCTTATAGCAACAGAGGCTACACGAGGAGAGCATCATC GACGGAAGGGTCATCTTCGTCTAGTGCTGGTTTGGATCAGTTGGATGTGATGCTGGCAAGGGGTTAA
AA sequence Show only first row Show all	>Lus10027574 pacid=23144441 polypeptide=Lus10027574 locus=Lus10027574.g ID=Lus10027574.BGIv1.0 annot-version=v1.0 MRGEMEVEEIEAVLEKIWDLHDKLSDAIHTISRAHFLNSIKNLRRPSPDKKHHHQHHHLFGGDDNRGVFGGGGGYVFVKEFRVDDNESAIREAKSLNAIR TALENLGEQLEFFHTVQLQQRAERDAAIARLEQSRIVLSLRLAEHHGKKYNVIEEALAFIGDVQDPNRFVSPNNLHTYPPSPTGENPAKLQRKSSNVVVN VLISSFDFAKRSLKLDHVGGVLGNVALFTVSMLALLHLQQVDSSKDLSYKQEHSAYSNRGYTRRASSTEGSSSSSAGLDQLDVMLARG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53280		PDV1	plastid division1 (.1)		Lus10027574 [exp]	0	1
AT5G53280		PDV1	plastid division1 (.1)		Lus10039325 [exp]	2.0	0.7668
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10021996 [exp]	5.1	0.7163
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10011424 [exp]	13.4	0.6562
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10002871 [exp]	15.2	0.6583
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	19.0	0.6671
AT3G58110			unknown protein		Lus10002186 [exp]	20.7	0.6683
AT2G19270			unknown protein		Lus10020014 [exp]	22.5	0.6575
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10041890 [exp]	23.2	0.6761
AT1G52343			unknown protein		Lus10007686 [exp]	25.4	0.6126
AT5G49210			unknown protein		Lus10043148 [exp]	25.8	0.6332

Compare expression of checked genes

Lus10027574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.