Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 246 / 1e-77 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT1G16370 61 / 6e-10 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G73220 52 / 2e-07 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT2G18480 51 / 7e-07 AtPLT3 Major facilitator superfamily protein (.1) AT2G43330 51 / 8e-07 ATINT1 inositol transporter 1 (.1) AT2G35740 50 / 9e-07 ATINT3 nositol transporter 3 (.1) AT4G16480 50 / 1e-06 ATINT4 inositol transporter 4 (.1) AT1G30220 47 / 9e-06 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G16130 47 / 1e-05 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G35300 46 / 3e-05 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027577 [exp] 599 / 0 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 593 / 0 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 296 / 4e-97 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 249 / 5e-79 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 254 / 4e-77 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 218 / 9e-67 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 206 / 1e-62 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 190 / 1e-56 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10014801 [exp] 60 / 9e-10 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150700 [exp] 312 / 4e-103 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 307 / 5e-99 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 270 / 4e-86 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 266 / 3e-85 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 262 / 1e-83 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.010G174300 [exp] 57 / 6e-09 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.011G130533 [exp] 56 / 2e-08 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.006G015300 [exp] 52 / 3e-07 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.009G113600 [exp] 50 / 1e-06 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.010G174400 [exp] 50 / 1e-06 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10027576 pacid=23151256 polypeptide=Lus10027576 locus=Lus10027576.g ID=Lus10027576.BGIv1.0 annot-version=v1.0 ATGCCTAGCTGTGAGTTATCCGTTGTTATGCCATCACTAAACTGGAGATGGCTGCTTGGATTTTCAGTCATACCGTCTTTCTGTCTACTTCTCCTCTACG GGATTGCACCAGAGTCCCCTCGCTATCTGTGCATGAAAGGAAGAACAGTAGAGGCACATCGCATTCTCGCAAAGATGGCACTGCTGAACTCTAAAAAACT ACCTCTTGGCACGCTTGTCACCAACGGACCGATTGTGGTGGATGACGAAGAATCTGCTCCTTCAGAAAACGAACCACTTCTCTCTGCGGCTAAGAAACAG ATCCAGGAGTTCAAGTCAAACTTCTCATCGTTTATCGTGCTCTTCTCCCCGAAACTACTCAAGACAACAATTCTTTTGTGGATCATATTCTTCGGGAATA CATTTGCCTACTATGGCATTATATTGCTTACTTCTGAGCTGAGTCACGGAGAAGGAAAATGCGGGATGAGCCTCTATCACTCGGGAGAAGGACATGTAGA TGATGGTAATAGCCTGTATGTAGATGTGCTCATCACTAGTTGTGCTGAATTTCCAGGGCTTATTCTATCTGCACTTACTGTGGATCGATTTGGCCGCAAA TTTTCAATGGTGATTATGTTCTTCCTAGCATGGGTATTCCTGATACCATTGGTGTTCCAGCAAACTCCTCTAGTGACGACAGGGTTATTGTTTGGAGCTC GAATGTGTGCACTAGGATCCTTCACTGTGGCTTGTGTTTATGCACCAGAGCTATATCCAACCTCAGCAAGGGCAACAGGAGCAGGAGCAGCGAATGCGAT AGGAAGAATAGGAGGGATGCTGTGCCCTCTGGTGGCAGTTGGATTGGTATCAAGTTGCCATGTAAAGGAAGCCATTGTTTTGTTTGAGATTGTAATAGCA TTATCAGTGGGTTGCATTCTTCTCTTCCCTTTTGACACAACAGGGAAGGACCTTAGTGACAATATTGTAGCAGCAGATCCTAAGAAAGAGCTTGCAGATG GAAGTTAG
AA sequence Show only first row Show all	>Lus10027576 pacid=23151256 polypeptide=Lus10027576 locus=Lus10027576.g ID=Lus10027576.BGIv1.0 annot-version=v1.0 MPSCELSVVMPSLNWRWLLGFSVIPSFCLLLLYGIAPESPRYLCMKGRTVEAHRILAKMALLNSKKLPLGTLVTNGPIVVDDEESAPSENEPLLSAAKKQ IQEFKSNFSSFIVLFSPKLLKTTILLWIIFFGNTFAYYGIILLTSELSHGEGKCGMSLYHSGEGHVDDGNSLYVDVLITSCAEFPGLILSALTVDRFGRK FSMVIMFFLAWVFLIPLVFQQTPLVTTGLLFGARMCALGSFTVACVYAPELYPTSARATGAGAANAIGRIGGMLCPLVAVGLVSSCHVKEAIVLFEIVIA LSVGCILLFPFDTTGKDLSDNIVAADPKKELADGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	1.0	0.9411
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	5.0	0.8961
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042469 [exp]	5.3	0.8918
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	6.0	0.9061
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10011035 [exp]	6.3	0.8888
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	7.1	0.9214
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10008555 [exp]	7.7	0.8776
AT3G61080			Protein kinase superfamily pro...		Lus10036555 [exp]	10.1	0.8791
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	13.5	0.8843
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	13.7	0.8892

Compare expression of checked genes

Lus10027576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.