Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18420 479 / 2e-167 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008554 [exp] 754 / 0 AT5G18420 484 / 2e-170 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092400 [exp] 587 / 0 AT5G18420 543 / 0.0 unknown protein Potri.017G122600 [exp] 584 / 0 AT5G18420 545 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10155 [flax] [poplar] CNOT11 CCR4-NOT transcription complex subunit 11
Representative CDS sequence Show only first row Show all	>Lus10027578 pacid=23151262 polypeptide=Lus10027578 locus=Lus10027578.g ID=Lus10027578.BGIv1.0 annot-version=v1.0 ATGATGATTTTGTACAAAACTGAAACGTGTGGGCCAAATCAGGTAATAATCGGGCCTGGTTCATCTGCTGTGGCCTCTTCCTTCCTCTACTTGTTCTTAT TTTGCCCTCGATATTATATTGCTTTCCTTTCAACGAACGAATTCCCCCGATTCACGATTCGGCTTACGGTACGGTACATGATGATGCGCAACTCTTTGAC CGTTGAAGAATCTCAATTCCTTCTCTCTTTGCTCCGATCCGACCAACGTCCCTTGGATGAGATCGCCGCCGAACTCTCCACCAAATTCCCCACTCACCGC CTTTTCGCTCTCTCCACGTCTCTCTTACTCCTCTTGGAGGCTGCATGCGATGAAGTCGCTGAAAATGTCGAGAGGGTTTTTATCTTCCAGTTATTGTCCT CTGCAGGTTCTGGTGCTGGCAAAGAGTTTCTCAGACAGTCTGCTGTAGACTACATTAAAGTTTTTGATCCTTCTGCACATGGGTTACCACAAAGGGAACA GTTGGAGCATCAGTTTGGTGATAAAGTTCATCCCCAGTCAAATAGTTCCTTGCTTAAAAGCACATCTGTCAAAAATTTTGTCGCTGATCCTGATGTACCA CATGGTTGTGATGCAAATTTACAAGAGTTTGATTTACAACCTAAAACCAAGCCAAAAGTTGGATCAGGAGATAGGTTGAAGACTGTGGCTGGATTACTGT CGCACTTGTCACATGAGGCAATAACTCCTCAATGGATTAGGCCGTGTCCCCCCGTCATGCCAGTACATGAAAGTGAGCTAGTATGGCTCAACCCTGACAA CAATCATGAGCTTTTGTGGGACCATGGCATGTGTGCGGATACCAGCAGGGGTGCTGCTGTGCGGGACCTGATTGCAAATGCCTTGAAGGGATCGCTTGCA CCTTCACAACAAGAGCAAGTTCTGGTGGAATTGGCAAACGACTCAAAGCTCGTGTATCACTGTGGACTAACACCGCGCAAGCTTCCAGATTTGGTGGAGA ACAATCCTCTCATTGCTGTTGAAGTTCTAACGAAGTTGATAACTTCGCCAGAGATTTCAGATTATTTTACAGTGCTTGTGAATATGGACATGAGTCTGCA CTCAATGGAGGTGGTGAACCGGCTTACAACTCAAGTCGAACTCCCAAAGGAATTTGTGCGCATGTACATAACCAACTGCATATCATCCTGCCAAAACATC AAGGATAAGTATATGCAGAACAGACTTGTGAGGCTGGTTTGTGTGTTCCTTCAGAGTCTGATCAGAAACCGGATCATTGACGTGAAGGACCTGTTCATTG AAGTGCAGGCATTCTGCATAGATTTCTCTCGGATTAGGGAAGCTGCTGGGTTGTTCAGGCTCCTTAAGACTTTGGAATGA
AA sequence Show only first row Show all	>Lus10027578 pacid=23151262 polypeptide=Lus10027578 locus=Lus10027578.g ID=Lus10027578.BGIv1.0 annot-version=v1.0 MMILYKTETCGPNQVIIGPGSSAVASSFLYLFLFCPRYYIAFLSTNEFPRFTIRLTVRYMMMRNSLTVEESQFLLSLLRSDQRPLDEIAAELSTKFPTHR LFALSTSLLLLLEAACDEVAENVERVFIFQLLSSAGSGAGKEFLRQSAVDYIKVFDPSAHGLPQREQLEHQFGDKVHPQSNSSLLKSTSVKNFVADPDVP HGCDANLQEFDLQPKTKPKVGSGDRLKTVAGLLSHLSHEAITPQWIRPCPPVMPVHESELVWLNPDNNHELLWDHGMCADTSRGAAVRDLIANALKGSLA PSQQEQVLVELANDSKLVYHCGLTPRKLPDLVENNPLIAVEVLTKLITSPEISDYFTVLVNMDMSLHSMEVVNRLTTQVELPKEFVRMYITNCISSCQNI KDKYMQNRLVRLVCVFLQSLIRNRIIDVKDLFIEVQAFCIDFSRIREAAGLFRLLKTLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18420			unknown protein		Lus10027578 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	3.3	0.8168
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	5.5	0.7838
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	6.0	0.8002
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	9.4	0.6944
AT3G63480			ATP binding microtubule motor ...		Lus10029983 [exp]	11.7	0.7533
AT5G03670			unknown protein		Lus10014378 [exp]	12.4	0.7010
AT1G16860			Ubiquitin-specific protease fa...		Lus10005996 [exp]	12.8	0.6743
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	17.8	0.7413
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10006625 [exp]	21.7	0.7147
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	23.6	0.7453

Compare expression of checked genes

Lus10027578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.