Lus10027579 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32750 1255 / 0 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
AT3G19040 1132 / 0 TAF1b, HAF2, TAF1 TBP-ASSOCIATED FACTOR 1B, TBP-ASSOCIATED FACTOR 1, histone acetyltransferase of the TAFII250 family 2 (.1)
AT5G55040 61 / 7e-09 DNA-binding bromodomain-containing protein (.1.2)
AT1G20670 58 / 7e-08 DNA-binding bromodomain-containing protein (.1)
AT5G46550 53 / 1e-06 DNA-binding bromodomain-containing protein (.1)
AT2G34900 53 / 1e-06 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
AT1G76380 53 / 2e-06 DNA-binding bromodomain-containing protein (.1.2.3)
AT3G01770 49 / 3e-05 ATBET10 bromodomain and extraterminal domain protein 10 (.1)
AT3G27260 47 / 0.0002 GTE8 global transcription factor group E8 (.1.2)
AT1G06230 46 / 0.0002 GTE4 global transcription factor group E4 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008553 2699 / 0 AT1G32750 1623 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
Lus10043121 60 / 2e-08 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2)
Lus10030739 58 / 7e-08 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1)
Lus10013220 56 / 2e-07 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1)
Lus10032629 56 / 5e-07 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2)
Lus10001391 54 / 8e-07 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1)
Lus10022999 54 / 9e-07 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1)
Lus10002784 52 / 5e-06 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1)
Lus10032076 51 / 9e-06 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G113300 1703 / 0 AT1G32750 1585 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
Potri.017G047600 1670 / 0 AT1G32750 1776 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
Potri.006G112000 61 / 6e-09 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1)
Potri.016G141400 61 / 1e-08 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1)
Potri.004G206200 61 / 1e-08 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1)
Potri.019G132601 59 / 4e-08 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1)
Potri.001G376400 58 / 4e-08 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3)
Potri.002G009100 59 / 5e-08 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1)
Potri.011G096400 56 / 2e-07 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3)
Potri.009G167500 56 / 2e-07 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0662 Triple_barrel PF12157 DUF3591 Protein of unknown function (DUF3591)
CL0662 PF00439 Bromodomain Bromodomain
CL0072 Ubiquitin PF00240 ubiquitin Ubiquitin family
Representative CDS sequence
>Lus10027579 pacid=23151192 polypeptide=Lus10027579 locus=Lus10027579.g ID=Lus10027579.BGIv1.0 annot-version=v1.0
ATGGAGATCTTGATGTTGACTACCTTGATGAGTACATCTTTCGACTTGCAGCTGTCATTGGAATCATCTAAAACTTCTGCTGATGTTGCAGAACAAGATT
ACAATGACAAGGCTGAAGATGCAGTGGATTATGAAGATATTGATGAAGACTATGATGGTCCTGAAATTCAAGATGCGGGAGAGGAGGAATACTTATTACC
AAAAAAGGAATACTTTTCTGCTGACATTTCTCTGTCTGCTCTAAGACCTACGACTTCAGTCTTTGACGATGAAAATTATGATGAAGATGAGGAAGATAAA
GAAGAAGAAGAACATGTTACTATGGAAGATAGACCTGGAGTTGCGACTTCTTTGTCAGGTCTGAATGTGACAGTGGTATCAGAAGGAGAACAATCCCCTC
AAGATGTTACACAACAAACTCTAGATGACGGAACTTCAAATTTTGAGTTGGAAGATCCGCATGGGGTTGCGGTACAAGAGCGAAATGAGCCAGAATTTAA
GGGTTCCACGCCACTACCTATTCTTTGTGTAGAAGATGGTATGGTGATTTTAAAGTTCTCTGAAATATTTGGGATTCATGAACCTTTGAAGAATGTGCCT
AAAAGGGAACATAGATATGCCATTTGCAAAGAGCAAAACGAGCCCGTAGATATTTCAGATATTGTTGAAGATGATGAAGAGGCCTTTTTGAGAGGATCAA
ATCAAGTAACTTCATCATGTCCACATGATATATCAAATTTTTATGACGAGGACTTGGGATTTTCAAACGGTGAAGGAGTGTTTCAGATGTCTGGTCCAAC
CAAGGAACCAGGTAAGGACATTTGTCTTAGTGGTGAACCAATGGGTGATGATTTGACAGCAAGCCTAGCTGTTGGATGGAAATCACAATGCTCTTCAACA
TTTTTTCTTCTTGATCAACATGATTGGGAAGATAGAATTCTCTGGGATGACTACCCTGCTGCAAGTGAAAGTAGCTTAGATTGTAATGATGTACCTATGC
ACGATTCAAGCGCAGACGAAGGAGCCGAAAATCTGCAACCAGAGTCCTTACTGCAGTTTAGTGAGAAAGAACATAATCTTCCACCACATAGCTCACTTGT
TCTCTTGGAATCCTTTAGATCTGAAGAAAGCCTAGACCGTAGCCGCTCATCTTCAGGGGGAAAGTGCCATCCACAACTTCTGAGGCTAGATTCTCTACTG
GATGTTGATAAAAGTAATGATGTCAACAGCAAAAAGGAGAGCAAAGAGATGGAGCTTCCCCAGAATGGCTCCTTAAGGCGTTTTAGTGAGCTCTCATTGC
AGAACAGAGACATCTTGGAAGGTTCTTGGTTAGATAATATAATATGGGACCAGCAAAAGGCTAATGTGAGGCCTAAGCTAATTCTTGACCTTCAAGATGA
GCAGATGCTTTTTGAAATTTCAGACGATAAAGAGAGCGAAAAATTGCAGCTCCATGCAGGGGCAATGATAATAACTCGTTCTTCAAAGTCTATAGGCTCT
TCAGAGTTTTCCGATCAAAGATACCAGTCTTGCTGGCAATTCAATATTGCCAATGACAAATTCTATACGAACAAGAAAATTTCTCAACAACTGCAGTCAA
ATTCTAGCAAACGAGTTCCTTATGGTATCAAAGTTCATCATTCTGCACCAGCAATAAAATTGCAAACCTTCAAATTGAAGCTAATCAATAAAGATTTGGC
TAATTTTCATCGACCAAAATCCTTGTGGTTTCCTCATGACAATGAGGTGGCTGTCAAACATCAAGGAAAGCTGGCTACAACGGGACCGATGATAGTAATT
TTGAAGAGCTTAGGTGGCAAGGTTACCAAACTTCATGTAGATGCCGAGGAAACTCTTTCTTCTGTTAAGTCAAAGGCTTCCAAAAAGCTAGATTTCAAAC
CAACAGAAGCGGTGAGGGTGCTCTATGCTGGAAAGGATCTTGAAGACCAAATATCATTTGCTGCTCAAAATGTTAGACCAAACTCTTTGCTTCATCTTGT
TCGGACCAAGATTCATTTGCTTCCAAAGGCACAAAGGATTCCTGGTGTGAACAAATCGCTACGTCCTCCAGGAGCATTTAAGAAGAAATCGGATCTATCT
GTAAAAGATGGTCATGTCGTTTTGATGGAGTATTGTGAGGAAAGACCTTTGTTGCTAAGCAATGTTGGGATGGGGGCAAATTTGCGCACTTACTACCAAA
AGACTAGCCCCAGTGATCAAACTGGCTTATTGTTGCGCAACAGAGATGACCGTTGGGGAAATGTTGTGACACTTGATCCTAATGATAAATCACCTTTTCT
CGGAGATATAAAACCTGGTTGCTGCCAGTCATCTCTTGAAACAAACATGTATAAAGCACCAATATTTCCACACAAGGTGTCATCTACAGATTATTTATTG
GTTCGTTCGGCCAAAGGAAAATTGTCATTAAGACGCATCGACAGAGTTGCTGCTGTCGGACAAGAGGAGCCTATTATGGAGGTTTTCTCTCCTGCATCTA
AGAATCTTCAAGCATATGCATTGAACAGGTTACTGGTGCATGTTTATCGTGAGTTTAGGGCTGCCGAAAAGGGTGGCTTGATTCAATGGATCCGTGTAGA
TGAGTTGACAGCTCAGTTTCCAGGTGTCCCAGATTCCATCTTAAGAAAGAAGATGAAGGAATGTGCTGTACTCCGGAGGGATGCGCATGGAGATATGTTT
TGGTTCAAGAAAAGGGATTTTATTATACCATCTGAAGAAGAGTTGAAAAAAATGGTGACCCCTGAGAATGTATGTGCATATGAGAGTATGCAAGCTGGTC
TGTACCGTCTAAAGCACTTAGGAATTAGCAGGCTAACACTTCCTACTAGTGTTTCCAGTGCAATGAGTCAGCTACCTGATGAAGCAATAGCCTTGGCTGC
TGCATCACATATTGAGAGGGAATTGCAAATTACTCCGTGGAGCCTAAGTAGCAATTTTGTTGCCTGTACAAATCAGGACAGAGAAAACATTGAGCGGCTT
GAAATTACAGGTGTTGGTGATCCATCTGGTCGTGGGTTAGGATTCAGCTATGTCCGTGCCACTCCAAAGGGATCAGTGTCAAACGCTTTGGTCAAGAAAA
AGGCAGCTGCTGGTCGAGGAGGATCAACTGTCACTGGAACAGATGCTGACCTCCGTAGATTGAGCATGGAGGCTGCACGAGAGGTTCTTCTCAAGTTTGA
TGTTCCGGATGAACAGATTACAAAACTGACGAGGTGGCATCGCATAGCTTTGATACGGAAGCTTTCTAGCGAACAGGCTGCATCTGGGGTGAAAGTAGAC
CCAACAACGATAAGCAAATATGCACGTGGCCAACGGATGTCCTTTCTTCAGTTACAACAGCAGACGAGAGAAAAATGCCAAGAAATCTGGGATCGTCAAG
TTCAGTCTCTTTCGGCAGTCGATGGTGATGAGAATGATAGTGATTCTGAGGCAAACAGTGATCTTGATTCGTTTGCTGGGGACCTGGAGAACCTACTTGA
TGCTGAGGAGTGTGAAGGGGATGAAAGTAATTATGAGTCTAAGCGTGATAAAGGAGACGGTGTTAAGGGTCTAAAAATGAGAAGACACCCCTCACAAACT
CAAGCTGAAGAGGAAAATGAAGATGAAGCTGTGGAGGCAGCTGAACTGTGCAGGCTGCTCATGGATGGTGAGGCTGAGCAGAAGAAGAAAAAGAAGACTA
AAGGTGCTGGGCTGGAAGCACTGTTGCCAACGGGTTCGAAATTAAATGTGGTTGAAAGTGTAGAACATGTCAAGAAAGCAATCAAGCCACAACCTATTGA
ATTGCATGTCTTAAACGACAAGGGTAGGGAAATCAAGGAGGTAGAGAGCATATTTGGTAAAAAGAAAGTACCTGATAAGTTGAAGTCGATTAAGAAAATT
GATATCCCCTCCCTTCCTCAGATTAAAGCAAAAGGGTTCAAGGAGAAGAAGTCATCGAGAGAGAGTTTTGTCTGTGGAGCATGTGGTCAGCTCGGACACA
TGAGAACAAATAAGAACTGTCCCAGGTATCGTGAAGAAGTTGAAACACCAGTTGAGCCTGTGGATGTGGAGAAAGATTCTGGAAAGTTGATTTCTGTTGA
TCCTCCTAACAAGGCTCAGCAGAAAATCCAAAAGAAAAAGGTTGTGCCGAAAACTGGAGTAAGAAATGACGTTCAACAGCTCCCTGTAAAGTTTAAATGT
GGCTCGACAGAGGTTCCTTTTGAAAAACCTACACCTACTGTTGAAGCTTCTCAGAGTTGTGACCAAAATATCAATATCAGTGCACTGCCAGTCAGTTCTG
ATACTGATACCGGAAACAAATCGATCACTAAGATAAAAATTGCCAGCAAGGGAAGACCTGAGGTTGCATCAGTGCACAGGCCGTTTCAGATACAGCAGCC
TCCACTGGATACAGATAGAGGCGTAAAAGAATCTTATCGCCCCCCTGTCACCATCAAGCCACCAGTTAATGTGGAAAAAGACCGTCTCGACACTCGGAAA
ACTATTCTTATCCGTCCGCCAGCAGACAGAGAGAAAGATCCGTCACGTAGGAAAGTGGTTATCAGACAACCCAGGGAGGTTTGGGACGTGGACCAGATGA
GTCAGGATGGAAGCTCCGGTTTTGAGTACCAGAAGATGAAGAAAATCGTTGAACTATCAAGTTTTGAGAAGCAGAGGAAGCTGGAGACTCTACATTTTAC
AGGAGGATCTGCAAAGAAGAAGTCGAAAGAGGAGGTAAGGTGGTTGGAGGAGGAAGAGAAGAGGAGAAACGTGGAGAGGTTAAGAGAAGAAAGAAGAATG
AGGGCAGATCAGGAAACAAGAAGGTTAATTAAAGAACGAGAAATCAGAGAATATGAAGAAACGTTGAGAAGGGAGGAGGAAGAAGAAGAAGAAGAACGTC
AAAGAGCCAAGAAAAAGAAAAGGAAGGAAAGGCCAGACATTAGTGACGAGTATATGGAAGACTACAAAGGCAGGAGAAACGATAAAAGAGTGGCTGAAAG
AGACAGGGGCTTGAAGAGGCAACTAGCTGCCGGTGAATTGGGGAAATACAGTGCTAAGTATGCCCCGCCAACGAAACGTCGAAGAGGTGGAGAGGTTCTT
CTGTCAAACGCGTTGGAAGGGATTGTAGACACCCTGAGAGAGAGGCGTGAGCTGTCGTATCTGTTCCTAAAACCAGTATCGAAGAAGGAGGCCCCGGATT
ACTTGAAGATCATAGAGCGGCCTATGGATCTTTCGACGATAAAAGAGAAGGTGAGGAAAATGGAGTACAAGAGCAGAGAGGAGTTTAGGCGCGATGTATG
GCAGATAACTTTTAATGCACACAAGTACAACGACAGGAGGAACCCAGGTATTCCTCCACTGGCTGATCAGCTTTTGGAAATCTGTGACTTTTTGTTGCAT
GACAAGGCTTCGGAATTAGATGAGGCTGAAGCTGCTGTGGGAATCTAG
AA sequence
>Lus10027579 pacid=23151192 polypeptide=Lus10027579 locus=Lus10027579.g ID=Lus10027579.BGIv1.0 annot-version=v1.0
MEILMLTTLMSTSFDLQLSLESSKTSADVAEQDYNDKAEDAVDYEDIDEDYDGPEIQDAGEEEYLLPKKEYFSADISLSALRPTTSVFDDENYDEDEEDK
EEEEHVTMEDRPGVATSLSGLNVTVVSEGEQSPQDVTQQTLDDGTSNFELEDPHGVAVQERNEPEFKGSTPLPILCVEDGMVILKFSEIFGIHEPLKNVP
KREHRYAICKEQNEPVDISDIVEDDEEAFLRGSNQVTSSCPHDISNFYDEDLGFSNGEGVFQMSGPTKEPGKDICLSGEPMGDDLTASLAVGWKSQCSST
FFLLDQHDWEDRILWDDYPAASESSLDCNDVPMHDSSADEGAENLQPESLLQFSEKEHNLPPHSSLVLLESFRSEESLDRSRSSSGGKCHPQLLRLDSLL
DVDKSNDVNSKKESKEMELPQNGSLRRFSELSLQNRDILEGSWLDNIIWDQQKANVRPKLILDLQDEQMLFEISDDKESEKLQLHAGAMIITRSSKSIGS
SEFSDQRYQSCWQFNIANDKFYTNKKISQQLQSNSSKRVPYGIKVHHSAPAIKLQTFKLKLINKDLANFHRPKSLWFPHDNEVAVKHQGKLATTGPMIVI
LKSLGGKVTKLHVDAEETLSSVKSKASKKLDFKPTEAVRVLYAGKDLEDQISFAAQNVRPNSLLHLVRTKIHLLPKAQRIPGVNKSLRPPGAFKKKSDLS
VKDGHVVLMEYCEERPLLLSNVGMGANLRTYYQKTSPSDQTGLLLRNRDDRWGNVVTLDPNDKSPFLGDIKPGCCQSSLETNMYKAPIFPHKVSSTDYLL
VRSAKGKLSLRRIDRVAAVGQEEPIMEVFSPASKNLQAYALNRLLVHVYREFRAAEKGGLIQWIRVDELTAQFPGVPDSILRKKMKECAVLRRDAHGDMF
WFKKRDFIIPSEEELKKMVTPENVCAYESMQAGLYRLKHLGISRLTLPTSVSSAMSQLPDEAIALAAASHIERELQITPWSLSSNFVACTNQDRENIERL
EITGVGDPSGRGLGFSYVRATPKGSVSNALVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFDVPDEQITKLTRWHRIALIRKLSSEQAASGVKVD
PTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVDGDENDSDSEANSDLDSFAGDLENLLDAEECEGDESNYESKRDKGDGVKGLKMRRHPSQT
QAEEENEDEAVEAAELCRLLMDGEAEQKKKKKTKGAGLEALLPTGSKLNVVESVEHVKKAIKPQPIELHVLNDKGREIKEVESIFGKKKVPDKLKSIKKI
DIPSLPQIKAKGFKEKKSSRESFVCGACGQLGHMRTNKNCPRYREEVETPVEPVDVEKDSGKLISVDPPNKAQQKIQKKKVVPKTGVRNDVQQLPVKFKC
GSTEVPFEKPTPTVEASQSCDQNINISALPVSSDTDTGNKSITKIKIASKGRPEVASVHRPFQIQQPPLDTDRGVKESYRPPVTIKPPVNVEKDRLDTRK
TILIRPPADREKDPSRRKVVIRQPREVWDVDQMSQDGSSGFEYQKMKKIVELSSFEKQRKLETLHFTGGSAKKKSKEEVRWLEEEEKRRNVERLREERRM
RADQETRRLIKEREIREYEETLRREEEEEEEERQRAKKKKRKERPDISDEYMEDYKGRRNDKRVAERDRGLKRQLAAGELGKYSAKYAPPTKRRRGGEVL
LSNALEGIVDTLRERRELSYLFLKPVSKKEAPDYLKIIERPMDLSTIKEKVRKMEYKSREEFRRDVWQITFNAHKYNDRRNPGIPPLADQLLEICDFLLH
DKASELDEAEAAVGI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32750 GTD1, TAF1, HAF... TBP-ASSOCIATED FACTOR 1, HISTO... Lus10027579 0 1
AT3G06290 AtSAC3B yeast Sac3 homolog B, SAC3/GAN... Lus10012769 1.4 0.9329
AT5G15020 SNL2 SIN3-like 2 (.1.2) Lus10032181 1.4 0.9456
AT1G08600 ATRX, CHR20 P-loop containing nucleoside t... Lus10003572 3.0 0.9321
AT5G46400 ATPRP39-2 ,AT P... Tetratricopeptide repeat (TPR)... Lus10015257 3.0 0.9039
AT5G12400 DNA binding;zinc ion binding;D... Lus10027346 3.5 0.9157
AT5G56930 C3HZnF EMB1789 embryo defective 1789, CCCH-ty... Lus10028950 3.9 0.9169
AT4G29380 AtVPS15 Arabidopsis thaliana vacuolar ... Lus10043037 4.0 0.9176
AT2G19710 Regulator of Vps4 activity in ... Lus10000978 7.2 0.8783
AT3G13225 WW domain-containing protein (... Lus10005845 7.2 0.8981
AT4G08540 DNA-directed RNA polymerase II... Lus10020601 8.5 0.8795

Lus10027579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.