Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 168 / 2e-44 AtRLP6 receptor like protein 6 (.1) AT3G05370 152 / 9e-39 AtRLP31 receptor like protein 31 (.1) AT3G23110 149 / 5e-38 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) AT3G11080 147 / 2e-37 AtRLP35 receptor like protein 35 (.1) AT1G47890 144 / 3e-36 AtRLP7 receptor like protein 7 (.1) AT5G62230 142 / 1e-35 ERL1 ERECTA-like 1 (.1.2) AT3G05360 140 / 4e-35 AtRLP30 receptor like protein 30 (.1) AT1G71400 139 / 1e-34 AtRLP12 receptor like protein 12 (.1) AT3G56370 137 / 4e-34 Leucine-rich repeat protein kinase family protein (.1) AT3G28890 134 / 6e-33 AtRLP43 receptor like protein 43 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032335 [exp] 452 / 8e-150 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 440 / 2e-145 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 424 / 4e-139 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10028053 [exp] 266 / 7e-83 AT3G11080 120 / 8e-29 receptor like protein 35 (.1) Lus10011039 [exp] 231 / 3e-65 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10003389 [exp] 220 / 7e-62 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002215 [exp] 200 / 3e-57 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014905 [exp] 196 / 3e-56 AT1G47890 240 / 4e-70 receptor like protein 7 (.1) Lus10003387 [exp] 196 / 2e-53 AT1G47890 394 / 3e-120 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128400 [exp] 283 / 1e-84 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G120600 [exp] 218 / 7e-61 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.011G104600 [exp] 178 / 1e-47 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.011G055000 [exp] 169 / 1e-44 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.001G437700 [exp] 163 / 1e-42 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.012G027600 [exp] 159 / 3e-41 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.012G029000 [exp] 159 / 5e-41 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.012G027400 [exp] 153 / 3e-39 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.T125004 [exp] 153 / 4e-39 AT1G45616 384 / 9e-117 receptor like protein 6 (.1) Potri.011G141100 [exp] 149 / 1e-38 AT2G33020 295 / 2e-89 receptor like protein 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027580 pacid=23151218 polypeptide=Lus10027580 locus=Lus10027580.g ID=Lus10027580.BGIv1.0 annot-version=v1.0 ATGATAGTACTCTCACATCTCTACTCTTCTGTTTCTCCCACCCAAATCCGTTGCTTAAACCACGATAGATCACTTCTCCTACAGCTCAAACACGATATCT CCATCAATACTAGAAATTGGGATAATTTCCTACTAGATGTGCTGCCTCCACCGAAAGTTTGGTCATGGAACGACACCAGAAATCACAGAGATTGCTGCTT GTGGGAAGGAGTCACTTGTGATTCCCAGTCGGGTCATGTTGTCGGCCTCGACCTTAGCAGTAGCTCCATTGTTGGCGGGATCAATGGGTCTAGCAGCCTC TTCCGTCTTCGTCGCCTCCAACACCTTAGCCTTGCTCATAACCACCTGTACGATTTCCCTCGTGGTTTTAGTAAGCTGTCGAGCTTGACCCATCTCAACC TCTCATGGGCAGGATTCCAAGGCCCGATCCCAGAGTATGAAATTTCGACACTGGGACGATTGGTCTCCCTTGATCTTTCTCATAATAATATCATTGGTGG TGCAAGTGTAGATATGGAAAAGCTAGTCACCAACTTGACGAGGCTGCGAGTGCTTCGTCTCGATGGATTATATCTCTCCTATGGCGGCTTTAGCAACAAA TCCTTGTCATCATTGTTACCTGAAACAATTCGAGAGCTGAGACTCGCCGATTGTAACCTCACTACAGTGCAATTTGCATCCCTTCTACACATGAGATCCC TCACTCATTTGGTGTTGTCTCGCAATAACCTTACGTGGAATGTTTCTGACGACTATTCGTTCGTCGAGTTTCCTCGTCTCATACATCTGGATCTTTCCGA TTGTGCGTTGTATGGAACATTTCCAGGTAGTGTTTTCTTAATGCGCAATCTCCAACACCTTGATGTTTCGTCAAACCCTCTTCTCGCTGGTGCTTTGCCT GAATTCCCTACTGGCACCAGTCCAGTACTACAAGCCATTTACCTTTCACATACAATTTTTTCTGGGGAAGTACCTGTTTCCATCAACAACTTAGTATCGC TCAAGATATTGGAACTCGATAGATGCAACTTTACCGGTTTTGTCCCCTCTTCAATTGAAAATCTAACGGAGTTACATGCTCTTACGTTGTCTGGGAACTA CTTCAATGGTCCACTCCCATTACTGACTTCTTCTAAGAAGATTGAGCTACTCGACTTATCGTACAATAATTTCAGTGGTAACATTCCACAATCTTATGGT GACTTTGACAATCTTCTAGTTCTGGATTTGGCGTATAACGATCTACAAGGTCACATCCCAATATCATTCCAACAACTGAAGCGGTTGGAAACACTAGACA TTTCATCAAACAAGCTCTCCGGCAACATCCCGATACAACTTACGAATCTCAAGTCCCTATTGTATTTGGACCTGTCATATAATTCACTTAGTGGAGCTAT ACCTGTAATTGGCAATCAGCTGGTTGATAATTTTGGTGCAAGTTGTTATACAGGGAATCCTGAACTGTGTGGCCCTCCGTTGCCTGACGCTTGCTTTCAA GTAACAGTCCCAGACTCGGGAGGGCAGAGTGAACAAAGTGTGTTTGATTGGGACTGCTTTGGTTACGGAATCGCATGTGGATGGGGATCGGGTGTTATTT TTGGAATTTTGGTGGTCAAACTTATATATGGAAATCCCTTTCATTTGTGA
AA sequence Show only first row Show all	>Lus10027580 pacid=23151218 polypeptide=Lus10027580 locus=Lus10027580.g ID=Lus10027580.BGIv1.0 annot-version=v1.0 MIVLSHLYSSVSPTQIRCLNHDRSLLLQLKHDISINTRNWDNFLLDVLPPPKVWSWNDTRNHRDCCLWEGVTCDSQSGHVVGLDLSSSSIVGGINGSSSL FRLRRLQHLSLAHNHLYDFPRGFSKLSSLTHLNLSWAGFQGPIPEYEISTLGRLVSLDLSHNNIIGGASVDMEKLVTNLTRLRVLRLDGLYLSYGGFSNK SLSSLLPETIRELRLADCNLTTVQFASLLHMRSLTHLVLSRNNLTWNVSDDYSFVEFPRLIHLDLSDCALYGTFPGSVFLMRNLQHLDVSSNPLLAGALP EFPTGTSPVLQAIYLSHTIFSGEVPVSINNLVSLKILELDRCNFTGFVPSSIENLTELHALTLSGNYFNGPLPLLTSSKKIELLDLSYNNFSGNIPQSYG DFDNLLVLDLAYNDLQGHIPISFQQLKRLETLDISSNKLSGNIPIQLTNLKSLLYLDLSYNSLSGAIPVIGNQLVDNFGASCYTGNPELCGPPLPDACFQ VTVPDSGGQSEQSVFDWDCFGYGIACGWGSGVIFGILVVKLIYGNPFHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	2.2	0.9574
AT1G31710			Copper amine oxidase family pr...		Lus10010542 [exp]	2.6	0.8976
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	3.7	0.9415
					Lus10041664 [exp]	4.5	0.9257
					Lus10041663 [exp]	4.9	0.8970
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	5.7	0.9279
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	6.6	0.8906
AT2G41810			Protein of unknown function, D...		Lus10035451 [exp]	8.4	0.8246
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	8.4	0.8956
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	8.5	0.8959

Compare expression of checked genes

Lus10027580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.