Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58100 1407 / 0 unknown protein AT3G28720 71 / 3e-12 unknown protein AT4G16180 48 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008552 [exp] 1034 / 0 AT5G58100 886 / 0.0 unknown protein Lus10008551 [exp] 206 / 2e-61 AT5G58100 154 / 8e-44 unknown protein Lus10033019 [exp] 74 / 8e-14 AT3G28720 450 / 2e-155 unknown protein Lus10015362 [exp] 74 / 3e-13 AT3G28720 628 / 0.0 unknown protein Lus10033020 [exp] 46 / 0.0002 AT3G28720 599 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150600 [exp] 1521 / 0 AT5G58100 1362 / 0.0 unknown protein Potri.006G080700 [exp] 1501 / 0 AT5G58100 1315 / 0.0 unknown protein Potri.017G078700 [exp] 71 / 3e-12 AT3G28720 823 / 0.0 unknown protein Potri.004G123900 [exp] 68 / 2e-11 AT3G28720 852 / 0.0 unknown protein Potri.010G146800 [exp] 47 / 5e-05 AT4G16180 1235 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027581 pacid=23151305 polypeptide=Lus10027581 locus=Lus10027581.g ID=Lus10027581.BGIv1.0 annot-version=v1.0 ATGGGTTCTTGCAGGTTGCTCGTCCTTTTCTGCTCCGCAATTCTGCTGTTTGCAGGCACTGGCTCATACGGGTTGTCAAATGGAACTCAGAGAACTGGGA CAGCATCTGTGTTTTCGCTGTTCAATCTCAAAGAGAAGAGTAGGTTTTGGAGTGAGGCGGTTATACGAAGCGACTTTGATGATTTGGAGTCAAATCCTGG CAAAATGGGAGTTATAAATTACACCAAGGCAGGAAACATCGCAAATTATCTAATGCTTCAAGAAGTGGATGCCATGTACCTACCGGTTCCTGTAAATTTC ATTTTTATAGGATTTGAAGGGAAGGGGAATCAAGATTTCAAGCTTCATCCAGATGAACTTGAGCGTTGGTTCACGAAAATCGATCACATCTTTGAACATA CAAGAGTACCCCAAATCGGCGAAGTTCTTACTCCATTTTACAAAATCAGTGTTGACAAAGGACAACGACATCACCTTCCCATTATCAGCCACATAAACTA CAACTTCTCTGTGCATGCAATTGAAATGGGTGAAAAGGTCACTTCACTTTTGGAGCATGCCATCAATGTTTTGGCTCGTAAGGATGACATCGGAAACAGG GACGAGAAGGATGCTCTTTGGCAAGTGGACATAGACATGATGGATGTTATTTTCACAAGCCTTGTTGAATACCTTGAACTTGATCATGCCTATAACGTTT TCATTTTGAATCCCAAGCATGACTTAAAGAGAGCTAAATATGGTTATCGGAGAGGCTTGTCAGAGTCAGAAATAGAGTTTCTGAAAAGGGATAAAGACCT ACAAGCTAAAATTTTGCAGTCGGGAACAGTTCCAGATAGTATCCTTGCACTCGAGAAGATTAAGAGACCTTTGTATGAAAAGCATCCAATGGCAAAATTT GCTTGGACAGTTGCTGAGGACACTGATACGGCTGAATGGTACAATAATTGTCTGGATGCGCTGAATAATGTTGAGAAGTTATACGAAGGGAAAGACACTT CTGAAATTATCTTGAGCAAAGCTTTACAGGTCTTGAAAGGGAAGAACACCTACATGAAGCTTCTTCTGCAGAAGGAACTAAAATCTGGAGACCTTGCTGG GTTTCAACCAGAATGTCTCACTGATACCTGGATCGGAATGGATAGGTGGGCATTCATTGATCTATCTGCAGGCCCTTTCTCATGGGGTCCTGCCGTGGGT GGGGAAGGGGTTCGCACTGATCTTAGTCTACCAAATGTGGAGAAAACAATTGGTGCAGTTCAAGAGATTTCTGAAGATGAAGCTGAAGACCGCTTGCAAG AAGCAATCCAGGAAAAATTTGCGATATTTGGTGATAAAGACCACCAGTCGATCGATATCCTTCTGGCTGAAATTGATATATATGAGCTTTTTGCTTTCAA GCACTGTAAAGGGAGAAAGGTTAAACTAGCACTTTGTGAAGAGCTTGATGAGAGAATGACGGACTTGAAAAGTGAACTTCAGTCCTTAGAAGGTGAAGAA CATGATGAGAGCCATAAGAAGAAGGCTATTGAGGCATTGAAACGCATGGAAGGCTGGAATCTTTTCACCGACCCTCATGAGGATTTCCAAAATTACACTG TTGCACGGGATGCCTTTCTTGCACATTTAGGTTCAACACTTTGGGGGTCAATGAGACACATAGTTTCACCTTCGATTGCTGATGGTGCATTCCATTACTA TGAGAAGATATCGTTTCAATTGTTTTTCATAACACAGGAGAAAGTTAGAAGTATTAAACATTTACCTGTAGATCTCAATGCTATCATGGATGGGCTTTCA TCTTTGTTATTACCTTCGCAGAAACCTATGTTCAGTCCAAATTTGTTATCACTCTCAGAGGATCCTGCTCTAGCAATGGCTTTTTCAGTGGCACGACGAG CAGCAGCTGTCCCCCTATTGCTTGTGAATGGAACATATAGGAAAACTGTTCGTACCTATCTTGACTCCTCCATTCTTCAGTATCAGTTGCAGAAGCTGAA TGATCATGGTTCTCTTAAAGGAGCACATGCCCATACCAGATCTACACTCGAAGTTCCCATCTTTTGGTTCATTCATGGAGAGCCATTGTTAGTCGACAAG CATTATCAAGCAAAATCGCTTTCTGACATGGTTATTGTTGTTCAGTCAGAGCAATCATCATGGGAAAGCCATCTTCAGTGTAATGGACAATCACTCCTCT GGGACTTGAGGAGACCCGTAAAAGCTGGTCTTGCAGCTGTTTCTGAACATCTGGCTGGTTTACTTCCTCTTCACCTGGCATACAGCCATGCTCATGAAAC TGCAATTGAGGATTGGATATGGTCGGTAGGATGCAATCCTTTCTCCATTACATCTCAGGGCTGGGATATCTCAAAATTCCATTCTGATACAATTGCTCGG AGTTACATAATCACCACTCTTGAAGAGTCCATACAACTAGTCAATTCAGCCATACGCCGCCTACTCATGGAGAGGACATCTGAAAAAACATACAAGCTCT TCCATACTGAAGAGAAAGAACTTGTGGACAAGTATAACTATGTGGTCAGTTTGTGGAAAAGGGTTGCTACTGTTACTGGAGAGCTGCGTTATGTAGATGC CATGCGACTTCTTTATACCTTGGAGGAAGCCACAAAAGTGTTTTCTGCGCAAGTGAATGGAACGATTGAGCTTCTGCATCCAATCCACTGCACACGAGAG AGGAAAGTACAAGTGGTGTTTGATATGACAACAATTCCAGCATTTGTGATTGTTGCTGCTGTTTTGTATGTGGTGTTGAAGCCAGGAAGAGCCAAGCCTA AGATTAATTAG
AA sequence Show only first row Show all	>Lus10027581 pacid=23151305 polypeptide=Lus10027581 locus=Lus10027581.g ID=Lus10027581.BGIv1.0 annot-version=v1.0 MGSCRLLVLFCSAILLFAGTGSYGLSNGTQRTGTASVFSLFNLKEKSRFWSEAVIRSDFDDLESNPGKMGVINYTKAGNIANYLMLQEVDAMYLPVPVNF IFIGFEGKGNQDFKLHPDELERWFTKIDHIFEHTRVPQIGEVLTPFYKISVDKGQRHHLPIISHINYNFSVHAIEMGEKVTSLLEHAINVLARKDDIGNR DEKDALWQVDIDMMDVIFTSLVEYLELDHAYNVFILNPKHDLKRAKYGYRRGLSESEIEFLKRDKDLQAKILQSGTVPDSILALEKIKRPLYEKHPMAKF AWTVAEDTDTAEWYNNCLDALNNVEKLYEGKDTSEIILSKALQVLKGKNTYMKLLLQKELKSGDLAGFQPECLTDTWIGMDRWAFIDLSAGPFSWGPAVG GEGVRTDLSLPNVEKTIGAVQEISEDEAEDRLQEAIQEKFAIFGDKDHQSIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMTDLKSELQSLEGEE HDESHKKKAIEALKRMEGWNLFTDPHEDFQNYTVARDAFLAHLGSTLWGSMRHIVSPSIADGAFHYYEKISFQLFFITQEKVRSIKHLPVDLNAIMDGLS SLLLPSQKPMFSPNLLSLSEDPALAMAFSVARRAAAVPLLLVNGTYRKTVRTYLDSSILQYQLQKLNDHGSLKGAHAHTRSTLEVPIFWFIHGEPLLVDK HYQAKSLSDMVIVVQSEQSSWESHLQCNGQSLLWDLRRPVKAGLAAVSEHLAGLLPLHLAYSHAHETAIEDWIWSVGCNPFSITSQGWDISKFHSDTIAR SYIITTLEESIQLVNSAIRRLLMERTSEKTYKLFHTEEKELVDKYNYVVSLWKRVATVTGELRYVDAMRLLYTLEEATKVFSAQVNGTIELLHPIHCTRE RKVQVVFDMTTIPAFVIVAAVLYVVLKPGRAKPKIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58100			unknown protein		Lus10027581 [exp]	0	1
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007388 [exp]	2.0	0.9046
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	3.0	0.9103
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	4.2	0.8749
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	4.7	0.8697
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	5.7	0.9039
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	6.6	0.8964
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	7.1	0.8722
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10034116 [exp]	7.3	0.8190
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	7.5	0.8840
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	9.2	0.8621

Compare expression of checked genes

Lus10027581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.