Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58190 392 / 4e-130 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT3G13060 345 / 2e-110 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT5G61020 280 / 3e-87 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G13460 284 / 4e-87 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT1G27960 273 / 4e-84 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT1G55500 273 / 5e-84 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G17330 270 / 1e-83 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT3G03950 267 / 3e-83 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT1G48110 273 / 5e-83 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G79270 269 / 1e-82 ECT8 evolutionarily conserved C-terminal region 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033335 [exp] 322 / 1e-101 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 317 / 5e-100 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037028 [exp] 307 / 2e-96 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10015778 [exp] 291 / 2e-93 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10002624 [exp] 279 / 8e-86 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 279 / 2e-84 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10017111 [exp] 272 / 6e-82 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10018343 [exp] 269 / 3e-81 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10037364 [exp] 255 / 8e-77 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079900 [exp] 575 / 0 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.018G149800 [exp] 571 / 0 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.014G001000 [exp] 343 / 8e-110 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.007G002800 [exp] 324 / 3e-102 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 313 / 7e-99 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.019G034300 [exp] 295 / 3e-92 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.008G100200 [exp] 286 / 3e-87 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G080800 [exp] 278 / 2e-85 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.010G175500 [exp] 277 / 5e-85 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.010G152300 [exp] 277 / 2e-83 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10027582 pacid=23151182 polypeptide=Lus10027582 locus=Lus10027582.g ID=Lus10027582.BGIv1.0 annot-version=v1.0 ATGGATTCCGCTTCTCAGCAGGACCAAGATCGATTTGTCCCAACTGGTATCTTCCTCGTTTCTCAGCCTACACTCACTTATCTTTTTCCCCTTTCTTTAC TTCCTCGCTTCGCAGTTGCTTCTGTTCTGTCTCGATTCGTTTCCGCCACTTCTAGACCTTCGCTTTGTACTGTGACTTCCGTTCTGTGCTTTATCTGCTG TGCTACCTCGCTAGGCTACAGTAATGGCACGGGTACATGGGATGGATACGCTCAATATCCTAGTCCTGCTGTAGGCTTGCATATCTCTCCTGTGATGTAT AATGACAATTCTTCTCTTGTATTCCCTCCTGGCTATGGCTTTAATCCTGATATGGCTTATGGGCAGTATTCTCCTGTGGCTACACCTATGCCTTCGATTA TGCTTGATGGACAATTGTACTCTCCTCAGCATATCCCATTCTCACCAGCTCTCTATCCCCAGCATTCTCCAGATTTTCCTTCATCATTTCCTGTTTCATC GTCAGAGATTATGGCATCAGAAAGTAATAGTGAAAGCTTGCTTTTTGGGCCAGCCTCAGGTTACTACGTACATTATGGCCCGTATGGTGGAGGGAACATG TCTGGGGCGCCTGATTCCAATCCCTTAACATCTCCTGCAGCTTATCATCAACCCATGGGGATATTGGGTCCATATGAGCAGCATTTTGGGCAGATTTCTC AACACAGACCAGTGCAGGGATATGGATCGACTTCAACTTCCACTATGGGAAGATACGAGCGTGGTGGATCTTATCAACCTTCTAATTTTGGGGGAAGTTC TGTTCCTTATGCTGGAGCTAGGATGCGGTTCAGTATTGACAAGGGTAGAAGAAGAGAGCAGGAAACACTTTATTTTGCCAATGAATCTCTTGGATTTGAT CGTAATCGAGGGCCTCGGGCTTCAAAGCTGAGAACTACGAGTGCCGGTGACCAAGATTACTCTGGTAACAGAAGAGATGACTCTTCTGGTGCTGATGTTA CACATAGTTTATACAACAGTCCAGATTTTCTGACTCAATATGATAATGCAAAGTTTTTCATAATCAAGTCTTTCAGTGAAGACAATGTGCACAAAAGTGT TAAATATGGGGTATGGGCTAGCACACCTCATGGGAACAAAAAGTTGGATGCTGCCTATAATCAGGCAAAGGAGATAGATCCGAAATGTCCAATCTTTCTT TTGTTTTCGGTCAATGCTAGTGGACAGTTCTGCGGGGTAGCTGAAATGCTTGGCCCTGTGGATTTCGGAAAAGATGCTGACTACTGGCAGCAAGACAGGT GGAGTGGCCAGTTTCCAGTCCGCTGGCATATTGTTAAAGATGTTCCAAACCCTCGTTTTCGTCATATACTACTTGAAAATAATGAGAACAAGCCTGTTAC TCACAGTCGGGACTGCCAAGAGGTGAAACTAAAACACGGGATAGAGATTTTAAAGATTTTCAAGAGTCATGATTCCCAAACATCCATCCTAGACGATTTT GAGTTTTATGATCAGCGTGAGAGAACCTTGAGAGAAAGGAAAAGCAAGCAGCAAGATGTTCCAACTATGGATTCGACAGGTTGCGAGAATGTTACTAAGA TGTCTGATACTTTTGCTCAAGCACTTAAGTTGGGCGATGATAGTAAGGAAACAGCAGCGGGGGAAGAGGGTGGTCGTGAAAGAACTGATGCTGTTGTTGA TGATGTCAGCCAGTCAAACCATGTTACAGCAAGTGACAAGGATATTGTTACACCAAGTAAGTCATCTTCTGATGGTTTGAATGTACAAGATGATAGTCAG AGAGTACAGGTAAGCTGA
AA sequence Show only first row Show all	>Lus10027582 pacid=23151182 polypeptide=Lus10027582 locus=Lus10027582.g ID=Lus10027582.BGIv1.0 annot-version=v1.0 MDSASQQDQDRFVPTGIFLVSQPTLTYLFPLSLLPRFAVASVLSRFVSATSRPSLCTVTSVLCFICCATSLGYSNGTGTWDGYAQYPSPAVGLHISPVMY NDNSSLVFPPGYGFNPDMAYGQYSPVATPMPSIMLDGQLYSPQHIPFSPALYPQHSPDFPSSFPVSSSEIMASESNSESLLFGPASGYYVHYGPYGGGNM SGAPDSNPLTSPAAYHQPMGILGPYEQHFGQISQHRPVQGYGSTSTSTMGRYERGGSYQPSNFGGSSVPYAGARMRFSIDKGRRREQETLYFANESLGFD RNRGPRASKLRTTSAGDQDYSGNRRDDSSGADVTHSLYNSPDFLTQYDNAKFFIIKSFSEDNVHKSVKYGVWASTPHGNKKLDAAYNQAKEIDPKCPIFL LFSVNASGQFCGVAEMLGPVDFGKDADYWQQDRWSGQFPVRWHIVKDVPNPRFRHILLENNENKPVTHSRDCQEVKLKHGIEILKIFKSHDSQTSILDDF EFYDQRERTLRERKSKQQDVPTMDSTGCENVTKMSDTFAQALKLGDDSKETAAGEEGGRERTDAVVDDVSQSNHVTASDKDIVTPSKSSSDGLNVQDDSQ RVQVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58190		ECT10	evolutionarily conserved C-ter...		Lus10027582 [exp]	0	1
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	3.5	0.8248
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	5.3	0.8211
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	6.0	0.8316
AT1G24160			unknown protein		Lus10029213 [exp]	6.9	0.7866
AT1G20460			unknown protein		Lus10021826 [exp]	7.5	0.7426
AT1G68490			unknown protein		Lus10034327 [exp]	9.5	0.7679
AT3G14750			unknown protein		Lus10038143 [exp]	10.5	0.8228
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	18.3	0.7954
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	26.6	0.7838
AT3G12590			unknown protein		Lus10001698 [exp]	27.7	0.7734

Compare expression of checked genes

Lus10027582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.