Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33540 270 / 5e-88 metallo-beta-lactamase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008550 [exp] 452 / 3e-159 AT4G33540 387 / 6e-134 metallo-beta-lactamase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169900 [exp] 326 / 5e-110 AT4G33540 422 / 3e-148 metallo-beta-lactamase family protein (.1) Potri.008G085751 [exp] 56 / 5e-10 AT4G33540 52 / 4e-09 metallo-beta-lactamase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027583 pacid=23151246 polypeptide=Lus10027583 locus=Lus10027583.g ID=Lus10027583.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGACTCACGGCAGTCAACTTCACAACACTCAGATACCCGCAGGAACTGCTGCTGCCGTCATCATCATCAGTACCCTTGTCAAGACTTCGAA GATGTTGCCCGATCAAAGCAGTAAAGAGTGGAGGGGAGGAAGTAACAACAGCGCTGGGTGTTGCTCCTCCTCCGACCAACCCTTCGTCGTTGAGACGCCC ACAGAACGTCGAGGGAGAGTTCTTCGTCGACCGTAGATGCATAGATTGCGATACATGCCGATGGATGGCTCCACAAATTTTTACACGAGTAGATGAGATG TCTGCAGTTGTTAAACAGCCCGTGTCCAGTGATGAGAGGTTGAATGCTCTTCAGGCCTTACTCTCATGCCCAACGAGTTCAATCCATACAGAGAAACCCA CTCTTGATGTTCTGCAAGCTCAGAAGACTTTCCCACTTCCAATAGACGAGAAGAAAATTCCGGTAGTTGGCTTAATTCTGTTATTGTTCATGAGGCAAAT GTTTCCTGACCATACTCGTCATTCTTTATTTTTTGCTCATTGTTACGATTCAAATTCTAAGGGAGTTGTGAAGGTCATTAATATTGTTACTGTTTCCTGG GTTATGTACCATTTTCAGGGCATCTATCACTGTGGTTATCATTCCGAGAAGTCATATGGAGCTGCCTCCTACTTAATCATTCGTCCTGATGGAAACATAC TCGTTGACAGTCCTAGATACACTGAGAGGCAAGCTCGGAACATTGAAGCACTAGGAGGTGCAAGTTACATGTTTCTCACTCACATGGATGATGTGGCAGA TCATGAAAAATGGTCAAAGAGATTAAACTGTGAACGAATACTGCACACTGGAGATGTACCGACCACTTCGTCAATGATTACGAGGTCCAATTGCCTTCGG CAGGTGACTTCAGATACTGCTAATGTGGAAATCAAGCTGCAAGGAAATGGGCCATGGAGCCTTGGTGAGGATGTGGAGCTTATACACACCCCAGGACATA CAGAAGTACTTGCTTGTTTAGATGAATCTATACATGGAAACAAAGGACGGGCGCGTGAGAACGCGTGGTTTTCTCTCAACTCTCTAGAGGGATTTCACGG CGTTTCCTCAAAGATCGTCGGAGGAGGAGCTTCCTCTGTGGGTGCGCTCCTCTGA
AA sequence Show only first row Show all	>Lus10027583 pacid=23151246 polypeptide=Lus10027583 locus=Lus10027583.g ID=Lus10027583.BGIv1.0 annot-version=v1.0 MAARLTAVNFTTLRYPQELLLPSSSSVPLSRLRRCCPIKAVKSGGEEVTTALGVAPPPTNPSSLRRPQNVEGEFFVDRRCIDCDTCRWMAPQIFTRVDEM SAVVKQPVSSDERLNALQALLSCPTSSIHTEKPTLDVLQAQKTFPLPIDEKKIPVVGLILLLFMRQMFPDHTRHSLFFAHCYDSNSKGVVKVINIVTVSW VMYHFQGIYHCGYHSEKSYGAASYLIIRPDGNILVDSPRYTERQARNIEALGGASYMFLTHMDDVADHEKWSKRLNCERILHTGDVPTTSSMITRSNCLR QVTSDTANVEIKLQGNGPWSLGEDVELIHTPGHTEVLACLDESIHGNKGRARENAWFSLNSLEGFHGVSSKIVGGGASSVGALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33540			metallo-beta-lactamase family ...		Lus10027583 [exp]	0	1
AT3G51500			unknown protein		Lus10014816 [exp]	2.4	0.8862
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	3.3	0.8936
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013997 [exp]	13.4	0.8601
AT1G03290			unknown protein		Lus10012382 [exp]	14.3	0.8627
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	15.6	0.8731
AT3G02420			unknown protein		Lus10034084 [exp]	15.7	0.8622
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	16.7	0.8182
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	17.0	0.8610
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	23.4	0.8401
AT3G25570			Adenosylmethionine decarboxyla...		Lus10034412 [exp]	24.4	0.7970

Compare expression of checked genes

Lus10027583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.