Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 420 / 6e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 412 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 397 / 7e-138 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 390 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06650 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 384 / 1e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30840 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 380 / 2e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022195 [exp] 748 / 0 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 611 / 0 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 578 / 0 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 573 / 0 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 503 / 1e-179 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 488 / 1e-173 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 488 / 1e-173 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 483 / 1e-171 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 473 / 6e-168 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073300 [exp] 461 / 6e-163 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 449 / 2e-158 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 434 / 2e-152 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 400 / 4e-139 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 394 / 1e-136 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 389 / 2e-134 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 347 / 4e-118 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 345 / 3e-117 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 333 / 2e-112 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 327 / 5e-110 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10027585 pacid=23151253 polypeptide=Lus10027585 locus=Lus10027585.g ID=Lus10027585.BGIv1.0 annot-version=v1.0 ATGGCAATAACACCCACCCAGGAGCAGGATCCAGCTTCTTACGATAGGCTCGCAGAACTGAAGGCATTCGACGAAACCAAAGCCGGAGTCAAAGGCCTAG TTGATGCTGGAATCACTGAGCTCCCTCGTATATTCAAGGCACCACCTCATCTTCTGGACAACAAACCACCAAGCTTTTCATCCCAAGACCCGGACTTCAT TTTCCCAATCATAGACCTGGAAGGTGCGGCCAAAGACCCAGAGAAGAGGAAGCTAATTGTTCACCAAGTGAAAGAAGCATCTTCCAACTGGGGATTTTTC CAAGTGGTGAATCATGGAATTCCGCTCAGCGTGTTGGATGAGATGAAGGCTGGTGTTCGCAGGTTTCACGAGCAGGATGTCGAGGTGAAGAAGCAATTCT ATACCCGTGACGTTGTTACCAAAAAGATCATTTACAACAGCAACTTCGATCTCTACACCGGAGCCTTTACCAATTGGAGGGACTCTGTTCTGTTCAGTAT GGCTCCAGATCCTCTCTCCCGTGATGAATATCCAGCTTGTTGCAGAGATATCTTGCTTGAATATTCGAATGGAGTGGCGGAACTCGGACACTTACTTTTC CAATTGCTGTCAGAGGCTTTGGGGTTGGCTTCGAATCGTCTGATAGAAATGGAATGCACAAAGGGACTTAACTTGGCATGCCATTACTATCCGGCATGTC CAGAGCCAGAACTGACGATGGGAGCATGCAAGCATACTGATAATGACTTCATTACAGTGCTTCTCCAAGACCATAGCGGAGGCCTCCAAGTTCTTCACAA GGACCAATGGGTTGATATTCCACCCATGCCGGATGCTTTAGTGGTCAACCTTGGAGATTTACTCCAGCTAATATCGAACGATAAATTTATAAGTGCGGAG CATAGGGTGGTATCACAAAATGTCGGGCCAAGAGTATCCATTGCATCTTTCTTCAACACTGGTTTTACAGGGAATTCAAACAAATATGGACCCATCGAGG AGCTTTTATCAGAAAATGAGCCTCCAAAATATAGGCATACTACATTAACCGAGTTTAATACTCGCTTCTTCAATGAAGGCCTTCACGGGACTTCCGCGTT GCTTCATTTTAAGATTTAA
AA sequence Show only first row Show all	>Lus10027585 pacid=23151253 polypeptide=Lus10027585 locus=Lus10027585.g ID=Lus10027585.BGIv1.0 annot-version=v1.0 MAITPTQEQDPASYDRLAELKAFDETKAGVKGLVDAGITELPRIFKAPPHLLDNKPPSFSSQDPDFIFPIIDLEGAAKDPEKRKLIVHQVKEASSNWGFF QVVNHGIPLSVLDEMKAGVRRFHEQDVEVKKQFYTRDVVTKKIIYNSNFDLYTGAFTNWRDSVLFSMAPDPLSRDEYPACCRDILLEYSNGVAELGHLLF QLLSEALGLASNRLIEMECTKGLNLACHYYPACPEPELTMGACKHTDNDFITVLLQDHSGGLQVLHKDQWVDIPPMPDALVVNLGDLLQLISNDKFISAE HRVVSQNVGPRVSIASFFNTGFTGNSNKYGPIEELLSENEPPKYRHTTLTEFNTRFFNEGLHGTSALLHFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	0	1
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10017096 [exp]	4.2	0.9359
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	6.4	0.9519
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	10.6	0.9323
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	11.4	0.9405
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10012226 [exp]	11.4	0.9166
AT3G50910			unknown protein		Lus10028325 [exp]	11.7	0.9410
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10019790 [exp]	11.8	0.9270
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	13.0	0.9359
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004704 [exp]	14.1	0.9334
					Lus10023997 [exp]	14.3	0.9092

Compare expression of checked genes

Lus10027585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.