Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 417 / 6e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 402 / 4e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 389 / 9e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G59540 382 / 8e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30840 381 / 8e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 380 / 2e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 371 / 8e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 370 / 3e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 369 / 3e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 360 / 3e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022193 [exp] 712 / 0 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001103 [exp] 560 / 0 AT1G06620 427 / 2e-149 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 459 / 2e-162 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 457 / 2e-161 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 450 / 1e-158 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 450 / 1e-158 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 444 / 2e-156 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 439 / 2e-154 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 438 / 3e-154 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 453 / 4e-160 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 431 / 2e-151 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 421 / 4e-147 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 369 / 8e-127 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 364 / 6e-125 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 358 / 1e-122 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 328 / 9e-111 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 320 / 2e-107 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 318 / 1e-106 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 313 / 1e-104 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10027586 pacid=23151316 polypeptide=Lus10027586 locus=Lus10027586.g ID=Lus10027586.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCGTACGATCGACTCGCGGAGTTGAAATCCTTTGACGAAACCAAAGCAGGGGTCAAAGGACTCGTCGACTCAGGAATCAATCAACTCCCTC GTATCTTCCACGCGCCGCCTCATCTCCTCGACAACATCCCACCCTCCACCGCCCCTACAACTGATCATCCCGATTTCACCTTCCCGATCATAGACCTGGA AGGCGGCATAGTCACTCAAATCCAAGATCCAATCAAGCGCCAGGAGATAGTGGATAAAGTCAGGGATGCCTCAAAGCAATCTGGGTTTTTCCAAATCGTC AACCACGGGATCCCGTTAACCGTCCTTGAAGAAATGAAATCAGGGGTTCGCAGGTTTCACGAGCAGGACGTGGAGCAGAGACGGAAATTCTACACCCGCG ATTTCAACGCCAGGATCGTTTACAACAGCAACTTCGACCTCTACACGGCGCCATCGGCTAACTGGAGGGACACCGTGTCTTTTAATATGGCTCCAAACCC TCTTAATCCCGACCAGTTGCCCGCCGTCTGTGATGAAATTGTGGCAGAGTATTCTGGGCAAGTTGCAAAATTGGGGGATTTGTTGTTTGAGTTGCTGTCG GAAGCTTTGGGTTTAGAATCCAACTGCTTGAAGGATTTGGATTGTGGGAAGGGGATTCAGGTTGTGTGTCATTACTATCCGGCATGTCCTCAGCCTGAGC TTACATTGGGAGCAACTAAGCATGCTGATAACGACTTCATCACCATTCTTCTACAAGACCATATCGGAGGCCTGCAGGTTCTTCGTCATGGCCAGTGGGT TGACGTGCCTTCGATATCGGGAGCGTTTGTGATCAATATTGGAGATTTTCTACAGCTGGTTTCGAATGATGAGTTTGTAAGTGTGGAGCACAGAGTAGTA GCGAATAGCAAGGGACCGAGAATATCTGTTGCAAGTTTGTTTGGGACTTACCTACATCCGAACCCAAGAAAGTATGGACCGATCAAGGAGCTGTTATCGA ACGAGAATCCGCCCAAGTACAGGGAAACTACAACTGCAGAATATGTCATATGTGGAAACAACAAGGGACTTGATGGGACTTCTACTCTGTTGCAGTTCAA GATCTGA
AA sequence Show only first row Show all	>Lus10027586 pacid=23151316 polypeptide=Lus10027586 locus=Lus10027586.g ID=Lus10027586.BGIv1.0 annot-version=v1.0 MAASYDRLAELKSFDETKAGVKGLVDSGINQLPRIFHAPPHLLDNIPPSTAPTTDHPDFTFPIIDLEGGIVTQIQDPIKRQEIVDKVRDASKQSGFFQIV NHGIPLTVLEEMKSGVRRFHEQDVEQRRKFYTRDFNARIVYNSNFDLYTAPSANWRDTVSFNMAPNPLNPDQLPAVCDEIVAEYSGQVAKLGDLLFELLS EALGLESNCLKDLDCGKGIQVVCHYYPACPQPELTLGATKHADNDFITILLQDHIGGLQVLRHGQWVDVPSISGAFVINIGDFLQLVSNDEFVSVEHRVV ANSKGPRISVASLFGTYLHPNPRKYGPIKELLSNENPPKYRETTTAEYVICGNNKGLDGTSTLLQFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	0	1
					Lus10020455 [exp]	1.4	0.9836
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	4.7	0.9748
AT3G48180			unknown protein		Lus10043469 [exp]	6.0	0.9825
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10005262 [exp]	8.4	0.9788
					Lus10000859 [exp]	9.4	0.9790
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	11.0	0.9766
					Lus10005525 [exp]	11.6	0.9726
					Lus10041163 [exp]	11.9	0.9796
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	12.0	0.9660
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	12.6	0.9612

Compare expression of checked genes

Lus10027586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.