Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07360 800 / 0 SH3 domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008548 [exp] 969 / 0 AT2G07360 1822 / 0.0 SH3 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G149400 [exp] 873 / 0 AT2G07360 1806 / 0.0 SH3 domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10027588 pacid=23151186 polypeptide=Lus10027588 locus=Lus10027588.g ID=Lus10027588.BGIv1.0 annot-version=v1.0 ATGCCCTATTATATACCTCATGCTACGTTCTGTCAGGCAACTCCAGATATGGCTGTCACCTTGCTTGAAATCGCTCGGATCTTTGCTACTAAAGTTCCCG GAAAGATTGATGCTGATGTGTTACAACTATTATGGAAAACATGTCTTGTAGGTGCTGGCCCTGATGGAAAACATACAGCCTTGGAAGCAGTCACTATAGT TCTTGATCTACCACCACCACAACCCGGGTCACCATCGGGACTCACCCCAGTGGACAGGGTATCTGCGTCTGATCCAAAGTCTGCTCTTGCATTGCAGAAA TTAGTCCAAGCAGCAGTGTGGTTCCTTGGTGAAAATGCAAACTATGCTGCTTCTGAGTATGCCTGGGAATCTGCAACCCCTCCTGGTACTGCATTGATGA TGTTGGATGCTGATAAAATGGTTGCTGCAGCTAGTTCTCGTAACCCTACGCTTGCTGGTGCACTAACTAGATTACAGAGGTGTGCTTTCAGCGGCAGCTG GGAGGTTCGAATTGTTGCTGCTCAAGCCCTTACAACCATGGCAATCAGGTCTGGTGAGCCTTATAGGCTGCAGATTTATGAATTCTTAAATGCATTAGCA CAGGGTGGTGTGCAGTCTCAGTTGTCAGAAATGCATCTCAGTAATGGGGAAGATCAAGGTGCGAGTGGGACAGGTCTTGGAGTCCTGATCAGTCCCATGA TAAAGGTTCTCGATGAGATGTATATGGCACAAGATGAACTGATAAAGGATATACGCAACCATGATAATACAAAAAAAGAATGGACAGATGATGAATTGAA GAAACTGTATGAAACCCACGAGAAGCTTCTAGACATTGTTTCACTCTTCTGCTATGTTCCAAGGGCAAAGTATCTACCTCTAGGTCCAATTAGTGCAAAA CTCATTGATGGGTACCGCACAAAGCACAACATAACTGCTTCAACTGGTTTAAGTGATCCAGCTGTTGTTGCAACTGGGATATCTGACCTGGTTTATGAAT CTAAGCCAGCTCCTGTTGAGTCCGATGGCCTAGATGATGACTTAGTAAATGCTTGGGCAGCCAACCTTGGAGACGACGGCTTGATGGGAAACAGTGCACC TGCAATGAGCAGGGTAAACGAATTTCTTGCTGGGATGGGAACGGATGCCCCTGACGTGGACGATGAGAATATTGTTTCCAGACCTTCAGTTGGATATGAT GACATGTGGGCGAAGACACTTTTAGAATCATCAGAACTAGAGGAAGAGGATGGTAGATCATCTGGTTCATCTTCCCCTGATTCCATAGGATCAGTTGAAA CTTCAATTTCTTCGCACTTTGGTGGAATGAACTATCCTTCACTTTTCAGTTCGAAGCCAACCAATTACGGGGCATCACAAACCTCTGAGAGGTCATCAGG TGGCAGCAAATATGGCAACTCCTCCTCAATTTATGAGGGTACACGTTCTCCGATTAGAGAAGAACCACCATCATATGAATCTTCGGTCATGCAAAGATAC GAGTCATTTGAAAATCCCATGGCTGTGCCTGAGTCCTCCAGCTTCGAGTCTCGTGATGAAGAACGCAGCTCCTCCGGTAATCCTCAATTTGGAACGGCGC TCTACGACTTTACTGCAGGCGGAGATGATGAGCTGAGTTTAACAGCAGGGGAAGAGGTTGAAATCGAGGATGAGGTTGATGGATGGTTCTATGTAAAGAA GAAACGTCCTGGAAGAGATGGAAAGATGGCCGGTTTGGTTCCTGTCCTATATGTCAATCAACGTTAA
AA sequence Show only first row Show all	>Lus10027588 pacid=23151186 polypeptide=Lus10027588 locus=Lus10027588.g ID=Lus10027588.BGIv1.0 annot-version=v1.0 MPYYIPHATFCQATPDMAVTLLEIARIFATKVPGKIDADVLQLLWKTCLVGAGPDGKHTALEAVTIVLDLPPPQPGSPSGLTPVDRVSASDPKSALALQK LVQAAVWFLGENANYAASEYAWESATPPGTALMMLDADKMVAAASSRNPTLAGALTRLQRCAFSGSWEVRIVAAQALTTMAIRSGEPYRLQIYEFLNALA QGGVQSQLSEMHLSNGEDQGASGTGLGVLISPMIKVLDEMYMAQDELIKDIRNHDNTKKEWTDDELKKLYETHEKLLDIVSLFCYVPRAKYLPLGPISAK LIDGYRTKHNITASTGLSDPAVVATGISDLVYESKPAPVESDGLDDDLVNAWAANLGDDGLMGNSAPAMSRVNEFLAGMGTDAPDVDDENIVSRPSVGYD DMWAKTLLESSELEEEDGRSSGSSSPDSIGSVETSISSHFGGMNYPSLFSSKPTNYGASQTSERSSGGSKYGNSSSIYEGTRSPIREEPPSYESSVMQRY ESFENPMAVPESSSFESRDEERSSSGNPQFGTALYDFTAGGDDELSLTAGEEVEIEDEVDGWFYVKKKRPGRDGKMAGLVPVLYVNQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	0	1
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	1.0	0.9153
AT1G20760			Calcium-binding EF hand family...		Lus10016028 [exp]	2.6	0.8815
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	3.5	0.9101
AT3G15160			unknown protein		Lus10040027 [exp]	7.2	0.8713
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	7.9	0.8762
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	8.7	0.8901
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	8.7	0.9095
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	10.8	0.8982
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	11.0	0.8727
AT5G65620			Zincin-like metalloproteases f...		Lus10019236 [exp]	14.5	0.8486

Compare expression of checked genes

Lus10027588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.