Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07180 513 / 0 Protein kinase superfamily protein (.1.2) AT5G01020 410 / 8e-142 Protein kinase superfamily protein (.1) AT2G05940 379 / 6e-129 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT3G01300 379 / 9e-129 Protein kinase superfamily protein (.1) AT5G15080 378 / 3e-128 Protein kinase superfamily protein (.1) AT2G28930 375 / 4e-128 APK1B protein kinase 1B (.1.2.3) AT5G56460 374 / 9e-128 Protein kinase superfamily protein (.1) AT1G07570 372 / 4e-127 APK1A Protein kinase superfamily protein (.1.2.3) AT3G28690 369 / 2e-126 Protein kinase superfamily protein (.1.2.3) AT5G02290 369 / 5e-126 NAK Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008546 [exp] 693 / 0 AT2G07180 534 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040588 [exp] 550 / 0 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 405 / 4e-139 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10024391 [exp] 384 / 1e-131 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 381 / 8e-131 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 382 / 1e-129 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 377 / 1e-129 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005255 [exp] 381 / 4e-129 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 381 / 5e-129 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G149100 [exp] 537 / 0 AT2G07180 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G079600 [exp] 530 / 0 AT2G07180 539 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G143200 [exp] 417 / 1e-144 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 417 / 2e-144 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 389 / 1e-132 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 387 / 3e-132 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 383 / 8e-132 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 386 / 1e-131 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 383 / 8e-131 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 379 / 6e-130 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027589 pacid=23151244 polypeptide=Lus10027589 locus=Lus10027589.g ID=Lus10027589.BGIv1.0 annot-version=v1.0 ATGGGTCTTTGTTTCAGTATGGATAAGAAACATCACCAACTTCCCAAGGAACGTCGTCATCGCTATAAGGGAAGTGATTCCTTGAGGAATTCAGCTGCAC TAAACACAAAAGGGAGCTCCTCCTTTGATAGTCAAAGTTTAATAAGCAAACCCCCTAAGGTTGCTAGGAACGTTTCGGATCTTCGAAATAATCCTGCTGG ATATAGTAATGTTAATACTTTCACGTACGATGAAATGAAGCTCGCCACCGACAACTTTAGGCCCGATTTAATCCTAGGAGAGGGTGGATTTGGAGTTGTT TATAAAGGTGTGATAGATGAGAGTGTAAGGCCTGGCTATTCACCCTCAATCACGGTTGCAATCAAGGAGCTTAATCCTGATGGCTTGCAAGGAGACCGTG AATGGCTGGCAGAAGTCAATTATTTAGGTCAACTCAGTCATTCTAACCTTGTGAAGCTTATAGGCTACTGCTGTGAAGATGATCACAGGCTTTTGGTGTA TGAGTACATGGCAAGTGGCAGCCTCGAAAGGCATCTTTTTCGACGGGTTGGGTGTACATTGACATGGTCAAAACGAATTAAGGTTGCTATAGATGCTGCA AAAGGACTTGCTTTTCTTCATGATGCAGAGAGACCTGTCATATATCGCGATTTCAAGACATCCAATATACTGCTAGATGGGGACTTCAATGCAAAGCTTT CTGATTTTGGCCTTGCAAAAGATGGACCCATGGGAGACCAAACTCATGTCTCAACACGGGTAATGGGGACCTATGGCTATGCCGCTCCCGAGTATGTAAT GACTGGGCATTTGACAGCTCGAAGTGATGTTTATGGGTATGGAGTAGTGCTGTTAGAGTTGCTTCTTGGAAGGAGAGCACTAGACAAGAGCAGGGCCGGA AGAGAACACAACTTAGTCGAGTGGGCGCGGCCACTATTGATCCATAACAACAAGGTTTTGAGAATCTTAGACCCTAGAATGGACGGTCAGTATTCAGCTC CAACAGCAATCAAAGTTGCTCATTTAGCATACCAATGCCTTAGCCAAAACCCCAAGGAGAGACCATTGATGAGTGAGGTGGTGCAACTGTTGGAGACTGT AAAATCCAAGGACATGGACGATGATAATGATGATCATGTGTTTGATCCAAAGCATCCCAGACATGGAAGAAGGAGAAGAGAAAGACAAGTATGA
AA sequence Show only first row Show all	>Lus10027589 pacid=23151244 polypeptide=Lus10027589 locus=Lus10027589.g ID=Lus10027589.BGIv1.0 annot-version=v1.0 MGLCFSMDKKHHQLPKERRHRYKGSDSLRNSAALNTKGSSSFDSQSLISKPPKVARNVSDLRNNPAGYSNVNTFTYDEMKLATDNFRPDLILGEGGFGVV YKGVIDESVRPGYSPSITVAIKELNPDGLQGDREWLAEVNYLGQLSHSNLVKLIGYCCEDDHRLLVYEYMASGSLERHLFRRVGCTLTWSKRIKVAIDAA KGLAFLHDAERPVIYRDFKTSNILLDGDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGYGVVLLELLLGRRALDKSRAG REHNLVEWARPLLIHNNKVLRILDPRMDGQYSAPTAIKVAHLAYQCLSQNPKERPLMSEVVQLLETVKSKDMDDDNDDHVFDPKHPRHGRRRRERQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07180			Protein kinase superfamily pro...		Lus10027589 [exp]	0	1
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	22.4	0.6774
AT3G59390			unknown protein		Lus10040180 [exp]	60.0	0.6526
					Lus10008758 [exp]	189.1	0.6034

Compare expression of checked genes

Lus10027589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.