Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07170 676 / 0 ARM repeat superfamily protein (.1) AT4G27060 227 / 1e-62 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G27210 210 / 3e-58 ARM repeat superfamily protein (.1) AT1G50890 194 / 1e-51 ARM repeat superfamily protein (.1) AT1G59850 172 / 4e-46 ARM repeat superfamily protein (.1) AT5G62580 151 / 5e-38 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008545 [exp] 1316 / 0 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10011149 [exp] 208 / 4e-56 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 189 / 9e-50 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10040047 [exp] 170 / 3e-43 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10010730 [exp] 162 / 1e-41 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10019616 [exp] 138 / 5e-36 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10033129 [exp] 139 / 5e-34 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10036647 [exp] 137 / 2e-33 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10036675 [exp] 78 / 1e-14 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079500 [exp] 1008 / 0 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 219 / 2e-61 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 205 / 2e-56 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 202 / 4e-54 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 191 / 2e-50 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 135 / 4e-33 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 124 / 3e-29 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027590 pacid=23151315 polypeptide=Lus10027590 locus=Lus10027590.g ID=Lus10027590.BGIv1.0 annot-version=v1.0 ATGAGGACGCAACCGCTGTCAAAGGCTAGAGGATCTACGAGGGTCAACGCTCAACAGTCTAATTTTGAGCTAAAACACAAAGTGGTGCTAGCACTCAACA AACTTGCCGATCGGGATACTTGTCACATAGGTGCGGATGAGCTTGAGAAAGTGGTTGAATCTCTAACCCCGGATGGGATTACCCCATTCTTGTCTTGTAT ATTGGACACTGATAAGGAGCAAAAGAGTGCCGTACGGAAGGAATGTGTTAGATTGATTGGTATGATGATGAGTTTCCATGGGAGTCTTGTTGCACCTCAT CTTGCTAAGATGGTTGCTAGCATAGTTAAGAGGCTCAAAGATCCAGACTCTATTGTAAGGAATGCCTGTGTGGAAACGATGGCTGTTATGTCCTCTACAA TCAGCAACCACCATGGGGATGAATCTGATGGGGATTTTCTTGTGTTGGTTAAGCCCCTTTTTGAAGCGTTGGGTGAACAGAATAAATATGTGCAGTCAGG TTCAGCATTATGCTTAGCCAAAGTCATTGACAATACCCAGGATCCTCCAACTCCGATTTTACAGAGAATGTTGTCTCGGATTACAAAGTTGTTGAAGAAT CCACACTTTATGGCTAAACCAGCAGTTATAGAGTTGACTAGAAGTATTCTTCAGGCAGGTGGTGCTCCATCACAAAATATTCTAGCTGCTGCAATGACTA GCATTCAAGACGCCCTGAAGAACAGTGACTGGAGTACACGCAAGGCGGCATCTGTGGCGTTGGGAGAACTTGCTGCTGCTGGTGGATCCTGCTTAGGATC TTTCAAAGCTTCCTGCATTCGATCCCTTGAATCATGCCGTTTTGATAAAGTGAAACCCGTTAGAGACGCTATTAATCATGCCATACAGTATTGGAAAATT CTTCCGGGGTCTGATGCTCACGAGCCTTCTGAAGTAGGATCCTCTATAAAAGAAAATTACTGTGGAGGTGACTACAGTGATAACACGAGTACTAGTGGCT CTGCAAAGAAAGGTGCAATACTAAACAAAGTTATTACAGACTCGACTAAAAGAAGGATTCCTTCATCCGTAAAGAGAGCATGCCAACCTTACACTGACTC TCCAAAATCTAAAGCAGATGATTGGCATATTGAAATTGCCGTCCCGAAGCATCATGATTTGTCACGACAAGATCACCAGAATGACGAATCCCAGGGCAGT AGTTGTATTACTAGGAATGTAGAGAGGATGAGTGCTGACGTGTCAAGTCCTCCTGATATTAGCTGTGAATATGTGCCAATGGATGACAAAGAGGACTGTT TCTCTGCGTCCACCCTTGTTGCTGACAACTTCAACTCGAAAAGAGGTACCCATCATGACTTGCATAAGAATGATGATTTGTTGCTATTGAGGGGAAGAAG CCAGTATGTTGCAGCTGGAGAGACGAATACTGAAGACGTATATTGTGTAAATGTTCATGATCGTAGAAGTCTTGATTCAACAGTTACTGAAACTAGCTTC CAACCTTCATGCGGATGTTGCTCGCATGTGGCTGGTGAAGTTGCCTCAATTAGGAAACAACTTTCTGAGATAGAGAATAAACAAGCAAACTTAATGGAAG TGCTACAGGAGTTCTCAGCTGGGATAACGTCTAGCATGTCTCTTCTAAAGTCTAAAGTATCAGGTTTCGAGCATGAAATGGATAGAATATCCAGCTTTCT AGTGCAAGGAGCCAGACATTCAGAATCAGCAGTTTCTAGGATTATGAAGCAGAACCAAAATGTTGGATGTACTCCTAGGCCCTCCATTGATATTCACAAT AGGCAACAGTCACATTTCACCACAAAACACTCGGAGATTTGGGATAGTAGTAGAAGTAAATCGACAAAGTCAGTGAAACAAGTCAAGGAGATTAGTCCCG ATCTTACTGCAGTTTCGACCAGGAATGTTACAGTGAAGGGGATGCTAAAAAGCTCAGGTAGAGGGTCACAAAGCAATGGCAAAGTTGATGCTGCTCTTGC TTCAGTTGCAAATGTGAATAACAGGCAAAGTGGGATGGAGAATAAGCACGTGTATTGGCAACGCGTAAAAGCTTTCATGTCTGAAGGAGATTTGGACTCT GCATACGCAGAAGCTCTCTGTTCTGGCAATGAACTTATTTTTCTTGAGCTTCTCAATAGAACTGGTCCTGTTCTGGAATGCCTTTCCCGGGAAACTATGG ATGAAGTTCTTACCACTTTGGCATCTTGCTTCTTGGAACAAAGGTTTATCAATTCTGTTATACCTTGGCTGCATCAGGCAAGTTCTTCTATCTGTGTTGT GGAATTGAGCTCGATTCATGGAGCAGATTACCTTGGTCTATCTGCAAAAGGAAGAAGAGAGTTGTTGTCTGCCGCTGAGGAGGCTGTAGGTGTCGGATTT TCGAACCCTGCTGAAAGAAAATCTATGACCCAACTTACAGCTAGGTTGCATCAACTGTGGGGTAAGTAA
AA sequence Show only first row Show all	>Lus10027590 pacid=23151315 polypeptide=Lus10027590 locus=Lus10027590.g ID=Lus10027590.BGIv1.0 annot-version=v1.0 MRTQPLSKARGSTRVNAQQSNFELKHKVVLALNKLADRDTCHIGADELEKVVESLTPDGITPFLSCILDTDKEQKSAVRKECVRLIGMMMSFHGSLVAPH LAKMVASIVKRLKDPDSIVRNACVETMAVMSSTISNHHGDESDGDFLVLVKPLFEALGEQNKYVQSGSALCLAKVIDNTQDPPTPILQRMLSRITKLLKN PHFMAKPAVIELTRSILQAGGAPSQNILAAAMTSIQDALKNSDWSTRKAASVALGELAAAGGSCLGSFKASCIRSLESCRFDKVKPVRDAINHAIQYWKI LPGSDAHEPSEVGSSIKENYCGGDYSDNTSTSGSAKKGAILNKVITDSTKRRIPSSVKRACQPYTDSPKSKADDWHIEIAVPKHHDLSRQDHQNDESQGS SCITRNVERMSADVSSPPDISCEYVPMDDKEDCFSASTLVADNFNSKRGTHHDLHKNDDLLLLRGRSQYVAAGETNTEDVYCVNVHDRRSLDSTVTETSF QPSCGCCSHVAGEVASIRKQLSEIENKQANLMEVLQEFSAGITSSMSLLKSKVSGFEHEMDRISSFLVQGARHSESAVSRIMKQNQNVGCTPRPSIDIHN RQQSHFTTKHSEIWDSSRSKSTKSVKQVKEISPDLTAVSTRNVTVKGMLKSSGRGSQSNGKVDAALASVANVNNRQSGMENKHVYWQRVKAFMSEGDLDS AYAEALCSGNELIFLELLNRTGPVLECLSRETMDEVLTTLASCFLEQRFINSVIPWLHQASSSICVVELSSIHGADYLGLSAKGRRELLSAAEEAVGVGF SNPAERKSMTQLTARLHQLWGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	0	1
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	1.0	0.9821
AT2G04235			unknown protein		Lus10016054 [exp]	1.7	0.9796
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	2.4	0.9735
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	3.2	0.9802
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	3.5	0.9778
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	5.0	0.9772
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	7.5	0.9691
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	8.5	0.9681
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	9.8	0.9658
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	9.9	0.9674

Compare expression of checked genes

Lus10027590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.