Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02870 76 / 2e-15 unknown protein AT1G78640 73 / 2e-14 unknown protein AT2G33720 66 / 5e-12 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008543 [exp] 156 / 8e-48 AT4G02870 53 / 3e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099600 [exp] 97 / 4e-24 AT2G33720 112 / 7e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.003G191700 [exp] 94 / 2e-22 AT2G33720 110 / 3e-28 AP2/B3-like transcriptional factor family protein (.1) Potri.003G191901 [exp] 93 / 5e-22 AT2G33720 119 / 7e-32 AP2/B3-like transcriptional factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027591 pacid=23151243 polypeptide=Lus10027591 locus=Lus10027591.g ID=Lus10027591.BGIv1.0 annot-version=v1.0 ATGGTTCTAAATCTTACGACGCCTTATAAATTACCTGCTAACTGCGTCCTCCTTCCATGTTATATCCCCACTTCCTATCATTCTGGCGACTGGAAACTTT ACCCTGTCGGATTGAAGAACATTGTCGTTGCCGCCGAAGACCGAACTCCACCGTTGGCGTCTCAAGATTTCCAACTCAAATACCTTGCAGGAGAGTCCGG ATCAATTGATTCGGAGCCCGACCAGAATCCTGCAGCAAGTCCTCCACTCGTTGTTTCGACAGGCCGCAATTCCGGACTCAGAGCAAAAAACACCGATTAC GGCAAGAAATTGAACTTACCGCCAGATGCCACTGGTGAGAAACAACCAAACCCTACAGCGCCGCCTTCCGTTAGAGTCAAAATAGAGAACGACCTCACAG GGAAGAAGCTTTTGGAGATGAAGAACAGTTACAGCAGGAAAGACGAGGAAGAAGAAAAGGCGAAAGGGGTCAGCACGAAGCTGAAGCTATACGAGGATCC ATGGACGATTCGGAAAAAGCTAAAGTCGGTGGAAGTACGGACGGAAGAAGCAGGAGGAGCGCTGCTGATTGATTCCGCTACCGCGAAGGCCCACATAATG CCGGTGTTGACCAGGGAAGAGAAGGAGAGCCTGGTCAAGAATCGTGCGGTGGAGGTTTGCTTGTGGGACGTGGACACCCGGAGCGGGCACGATCTGTCGC TGGTGCGGCTGAAAGTGCAGTTCCGGTCAAAGGTACACCATGTAATCGGGTTCGGAGGGGAGTGGAACGACGAGTTTGTAAAGAGGAGGGGGTTGAAGGA AGGAGACGAGGTTGGTTTGTGTTGGGATCGCAATGCTTCTCGTTTCAATTTTCGATTGATTGCACGATCTTCTAAGTGA
AA sequence Show only first row Show all	>Lus10027591 pacid=23151243 polypeptide=Lus10027591 locus=Lus10027591.g ID=Lus10027591.BGIv1.0 annot-version=v1.0 MVLNLTTPYKLPANCVLLPCYIPTSYHSGDWKLYPVGLKNIVVAAEDRTPPLASQDFQLKYLAGESGSIDSEPDQNPAASPPLVVSTGRNSGLRAKNTDY GKKLNLPPDATGEKQPNPTAPPSVRVKIENDLTGKKLLEMKNSYSRKDEEEEKAKGVSTKLKLYEDPWTIRKKLKSVEVRTEEAGGALLIDSATAKAHIM PVLTREEKESLVKNRAVEVCLWDVDTRSGHDLSLVRLKVQFRSKVHHVIGFGGEWNDEFVKRRGLKEGDEVGLCWDRNASRFNFRLIARSSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02870			unknown protein		Lus10027591 [exp]	0	1
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	3.6	0.8452
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	6.5	0.8327
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	6.6	0.7925
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	13.3	0.7966
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	14.7	0.7708
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	16.2	0.7650
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	21.6	0.7571
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	21.8	0.7633
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007119 [exp]	23.5	0.7293
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	24.7	0.7592

Compare expression of checked genes

Lus10027591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.