Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20200 154 / 8e-43 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 146 / 4e-40 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 143 / 3e-39 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 139 / 9e-38 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 136 / 1e-36 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT4G31230 134 / 7e-36 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 131 / 5e-35 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 119 / 7e-31 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G20310 114 / 1e-29 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G72760 105 / 5e-26 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008542 [exp] 295 / 3e-95 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 214 / 7e-65 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 185 / 4e-54 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020184 [exp] 144 / 3e-42 AT2G24370 286 / 2e-91 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10042205 [exp] 146 / 3e-40 AT1G16760 691 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008609 [exp] 143 / 2e-39 AT1G16760 417 / 3e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 142 / 1e-38 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 136 / 1e-36 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10017145 [exp] 129 / 3e-35 AT5G35380 207 / 3e-60 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001900 [exp] 145 / 6e-40 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170901 [exp] 144 / 7e-40 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 144 / 2e-39 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G002400 [exp] 135 / 2e-36 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 130 / 2e-34 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 123 / 4e-32 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 123 / 4e-32 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 110 / 1e-27 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 110 / 1e-27 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G147200 [exp] 96 / 7e-23 AT5G20310 162 / 1e-45 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10027592 pacid=23151254 polypeptide=Lus10027592 locus=Lus10027592.g ID=Lus10027592.BGIv1.0 annot-version=v1.0 ATGTCGAAGAAGATTGGAGAAACCAAGGAGTTCCAACAAGTGGTGGTGGCTGTAGACACAGACAAGGGAAGCCAGCATGCTCTGAAATGGGCAACTGATC ATCTCCTCACCAAAGGCCAAACTGTTGTTCTCCTTCACGTCAAGCCCCGTCCATCTTCTTCTAATTCCTCTGTTTCAATGGTTGATGATGATCGTAACTC ACAACCAAATCAAGCGCATGCCAGAGAACTGTTGCTTCCCTTCCGTTGCTTCTGCAGCCGCAAAGATTTTAAATGCAGTGAAGTTGTAGTCGAGGATTAC GACATCGGCAAAGCAATCGTAGACTACGTGCATGCAAATTCTATCGATGCTTTGGTGCTCGGTTCTCCATCCAAAAGTGGCCTTGTCAGGAAGTTCAGGG TGTCGGATGTTCCAACCAATGTAGCCAAACTGGCACCAGATTTCTGCACTGTTTACATCATCGGTAAAGGGAAGGTATCGTCGGTAAAATCTGCGACCGC TTCGGTGCCTGCTAAACCTGTAGCCGCCATCCAAAGTTTCATGCCAGTGGCAGTCTCTGCATCATCAAGATCATCGTCCCCAAGCCGAAATTTCTCAAAT CTCGAACCTTCTTCTACGCCGCACCAAAGAGGTTTGCTTTCCTTACCAGCCTATGAGTTCTTTTACTTCCTGCCAGACGTTATAGCATAA
AA sequence Show only first row Show all	>Lus10027592 pacid=23151254 polypeptide=Lus10027592 locus=Lus10027592.g ID=Lus10027592.BGIv1.0 annot-version=v1.0 MSKKIGETKEFQQVVVAVDTDKGSQHALKWATDHLLTKGQTVVLLHVKPRPSSSNSSVSMVDDDRNSQPNQAHARELLLPFRCFCSRKDFKCSEVVVEDY DIGKAIVDYVHANSIDALVLGSPSKSGLVRKFRVSDVPTNVAKLAPDFCTVYIIGKGKVSSVKSATASVPAKPVAAIQSFMPVAVSASSRSSSPSRNFSN LEPSSTPHQRGLLSLPAYEFFYFLPDVIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20200			Protein kinase protein with ad...		Lus10027592 [exp]	0	1

Compare expression of checked genes

Lus10027592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.