Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 625 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 583 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 568 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 567 / 0 protein kinase family protein (.1) AT5G12000 567 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 560 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT2G07020 553 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 551 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 531 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 459 / 1e-154 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008542 [exp] 866 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 729 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 724 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 644 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 639 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 597 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 573 / 0 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 566 / 0 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 564 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078500 [exp] 657 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 627 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 563 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 562 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 553 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 536 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.001G198300 [exp] 528 / 2e-180 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170742 [exp] 510 / 8e-174 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 361 / 9e-116 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 357 / 4e-115 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027593 pacid=23151228 polypeptide=Lus10027593 locus=Lus10027593.g ID=Lus10027593.BGIv1.0 annot-version=v1.0 ATGCCAGATTCAGACATTTCTTTCGTCAGCAGCGGCAGGCCAAGCATTGATTACGATTTCTCATCTTTAAACGATAGTGATCCTGGACGTGTCTCCGATT TTGAAGATGTCCGAAACAGTTCTGCATCCTACAACTCACTCGATTTCACATCATCCCAGACTTTATCAACCAGTAGCTCCCAAGAAAGTTACAGACTTTC GAACGTTGGGCAGAGCTTCGAAGACATGGAAGCTGAGATGATGAGGTTGAGATACGAGCTTAAGCAGACAATGGAAATGTATAGTTCAGCTTGCAAGGAA GCCCTGACAGCTAAACAACAAGCTAGAGAGCTTCATAGGTGGAGAATGGAGGAAGAGCAAAGGTTGGAAGAGGCAAGAATGTCGGAAGAGGCTGCATTGG CTCTCGTCGAGAAGGAGAAAGCCAAATGCAAAGCAGCCCTCGAGGCAGCTGAAGCAGCCGCAAAGGTAGCCCAATTCGAAGCTCAGAAAAGGAAAGCCGC AGAGCAGAGAGCCATTCAAGACGCAGAGGAAAGAAAGAAAAACGAAGCAGCGGGATCATCTTTATCCCATAACGATATTCGTTACAGGAGATACGACATT GAAGAGATTGAATCAGCAACCAACGAATTCGCAAACAATTTGAAGATCGGAGAAGGAGGGTACGGACCGGTTTACAAGGCGCGTCTAGACCACACCCCGG TCGCAATCAAAGTATTGCGACCGGATGCAGCCCAAGGAAGGTCGCAATTTCAACAGGAAGTCAAAGTCTTATCCTGCATCCGACATCCCAACATGGTTCT CCTTCTCGGGGCTTGCCCCGAATATGGATGCTTGGTATACGAGTACATGGCGAACGGAAGCCTCGATGATAGACTTTTTAGAAGGGGGAACACTCCAACC CTTTCGTGGCAACTTAGATTCCGCATTTCTGCGGAAATAGCCACTGGCCTACTTTTCCTCCACCAAACCAAGCCCGAACCGCTAGTCCATCGGGATCTAA AGCCCGGGAACATCTTGCTAGACCGAAACTTCGTCAGCAAGATCAGCGATGTCGGGCTAGCAAGACTTGTGCCCCCATCAGTTGCGGACTCGGTCACACA ATATCGGGTAACATCAACGGCTGGAACTTTCTGTTACATCGATCCGGAATATCAGCAGACCGGAATGCTCGGGGTGAAGTCTGATATCTACTCTTTAGGT ATAATGCTGCTTCAAATAATAACTGCCAAGCCACCAATGGGGCTAACCCACCACGTACAAAGATCAATAGAGAATGGCACTTTTGCCAAAATTCTCGATC CAAATGTCGTAGACTGGCCTGTCGAAGAGGCCTTAAAGTTTGCAAATCTGGCACTTCAATGTGCGGAACTGAGAAGAAGAGATAGACCGGATCTCGGAAA AGTCATATTGCCGGAGCTTAACAAGCTTAGAGAACTGGCTGATGAGAATTCTCCAGGGAACTCATCACCACGCCACAGCACAGCAAGCCAGGATGTGTTA AGTGATGTCCAGTCTGGGTACAATAGCTCAAGAACACCATCCAGCTCCTCTTCATATGGTGGAAGAAAATAA
AA sequence Show only first row Show all	>Lus10027593 pacid=23151228 polypeptide=Lus10027593 locus=Lus10027593.g ID=Lus10027593.BGIv1.0 annot-version=v1.0 MPDSDISFVSSGRPSIDYDFSSLNDSDPGRVSDFEDVRNSSASYNSLDFTSSQTLSTSSSQESYRLSNVGQSFEDMEAEMMRLRYELKQTMEMYSSACKE ALTAKQQARELHRWRMEEEQRLEEARMSEEAALALVEKEKAKCKAALEAAEAAAKVAQFEAQKRKAAEQRAIQDAEERKKNEAAGSSLSHNDIRYRRYDI EEIESATNEFANNLKIGEGGYGPVYKARLDHTPVAIKVLRPDAAQGRSQFQQEVKVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDRLFRRGNTPT LSWQLRFRISAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADSVTQYRVTSTAGTFCYIDPEYQQTGMLGVKSDIYSLG IMLLQIITAKPPMGLTHHVQRSIENGTFAKILDPNVVDWPVEEALKFANLALQCAELRRRDRPDLGKVILPELNKLRELADENSPGNSSPRHSTASQDVL SDVQSGYNSSRTPSSSSSYGGRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	0	1
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	1.4	1.0000
					Lus10004437 [exp]	2.0	1.0000
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	3.0	1.0000
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	3.5	1.0000
					Lus10021739 [exp]	3.9	1.0000
					Lus10039674 [exp]	4.2	1.0000
AT5G52790			CBS domain-containing protein ...		Lus10027527 [exp]	4.6	0.8071
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	4.6	1.0000
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	4.9	1.0000
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	5.2	0.9819

Compare expression of checked genes

Lus10027593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.